LOC117599551 (LOC108279645)


Basic Information

Item Value
gene id LOC117599551
gene name LOC108279645
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4361332 ~ 4361942 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117599551
tgctgctcagcaacttcacccacagcaaccatgactttgatcagcgtcttcatctgcacactggcccTCTGGACTCAAGgatccagaggtcaggtgactgtgactcaGACTCCTTCAGTGCAAACTGTTGTTCCAGGAAACACAGTCACCATCAACTGTAGAACCAGTAGCAGAGTGAGAAATGGTGACAATCTCGCCTGGTACCtgcagaaacctggagaagctcctaaactcctgatctaCTGGGCTACTAGATTATACTCAGGGACTCCAGCTCGTTTCAGAGGCAGTGGATCTAATACTGActtcactctgaccatcagtggagtccagactgaagatgcaggagattactactgtcagagtgtACATGTGATCAGTAGTAGTGCtgtgttcacacagtgttagagcGTGGTACAAAAACCTCGGTCAGTGAGAGTGCACAGAGaagcactgctgcagctgggagcgactgcaggtgctgagggggaggatgtgatacagcacaatgac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117599551 True 513 V_segment 0.50 2 4361332 4361942

Neighbor

gene id symbol gene type direction distance location
cd36 cd36 coding downstream 300818 4044706 ~ 4060514 (-)
kdm7aa kdm7a coding downstream 416031 3919302 ~ 3945301 (-)
kmt2e kmt2e coding downstream 454679 3857515 ~ 3906653 (-)
orc5 orc5 coding downstream 549716 3798341 ~ 3811616 (-)
hcls1 LOC108279643,LOC107095911,LOC105918344,LOC103358095,LOC102201149,LOC102292035,LOC101481917 coding downstream 605475 3738884 ~ 3755857 (-)
psmc2 psmc2,LOC103382982 coding upstream 422186 4784128 ~ 4792797 (-)
gys2 gys2,LOC107659841,LOC107694689 coding upstream 535328 4897270 ~ 4917780 (-)
ldhba ldhb,ldhba,LOC107659842,LOC107589975,LOC107725606,LOC107586539,LOC107744904,LOC107694687 coding upstream 563774 4925716 ~ 4938813 (-)
slc25a3a slc25a3a,slc25a3,LOC108279629,LOC108437945,LOC107732290 coding upstream 592349 4954291 ~ 4965093 (-)
strap strap,LOC107744907,LOC107586834,LOC107725662,LOC107694684 coding upstream 626539 4988481 ~ 5003791 (-)
G276515 NA non-coding downstream 38651 4278059 ~ 4322681 (-)
G276538 NA non-coding downstream 52295 4308588 ~ 4309037 (-)
G276497 NA non-coding downstream 105388 4255200 ~ 4255944 (-)
G276420 NA non-coding downstream 218384 4070448 ~ 4142948 (-)
G276447 NA non-coding downstream 235751 4124465 ~ 4125581 (-)
LOC117599554 LOC108279645 non-coding upstream 24400 4386342 ~ 4387104 (-)
LOC117599550 LOC108279645 non-coding upstream 37339 4399281 ~ 4399935 (-)
G276556 LOC108279645,LOC108274854 non-coding upstream 38181 4400123 ~ 4415116 (-)
LOC117599559 LOC108279645 non-coding upstream 41569 4403511 ~ 4404115 (-)
G276557 LOC108279645,LOC108274854 non-coding upstream 52517 4414459 ~ 4557257 (-)
LOC113523868 NA other downstream 17787 4331260 ~ 4343545 (-)
G276530 slc35e3,LOC107556774,LOC107710682 other downstream 60808 4297860 ~ 4300524 (-)
G276421 NA other downstream 269469 4082278 ~ 4091863 (-)
golgb1 LOC108279640 other downstream 531930 3759211 ~ 3829402 (-)
G276340 NA other downstream 624255 3736130 ~ 3737077 (-)
LOC117599578 LOC108279645 other upstream 104119 4466061 ~ 4482565 (-)
G276650 LOC108279602 other upstream 372989 4734931 ~ 4738999 (-)
tmpoa LOC108279628 other upstream 604290 4966232 ~ 4984315 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other upstream 1619196 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other upstream 1620350 5982292 ~ 5984564 (-)

Expression


Co-expression Network