LOC117599553 (LOC108279645)


Basic Information

Item Value
gene id LOC117599553
gene name LOC108279645
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4439236 ~ 4439760 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117599553
atgactgagagctgctgctcagcaacttcacccacagcaaccatgactttgatcagcgtcttcatctgcacactggcccTCTGGACTCAAGGatccagaggtcaggtgactgtgactcaGACTCCTTCAGTGCAAACTGTTGTTCCAGGAAACACAGTCACCATCAACTGTAGAACCAGTAGCAGGGTGAATAGTGGTAATCAACTAGCCTGGTACCtgcagaaacctggagaagttcctaaactcctgatctaCAGTGCTACTAGCTTATACTCAGGGACTCCAGCTCGTTTCAGAGGCAGTGGATCTAATACTGActtcactctgaccatcagtggagtccagactgaagatgcaggagattactactgtcagagttaccATTATATCAGTAGTAGCTAtgtgttcacacagtgttagagcGTGGTACAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117599553 True 435 V_segment 0.47 2 4439236 4439760

Neighbor

gene id symbol gene type direction distance location
cd36 cd36 coding downstream 378722 4044706 ~ 4060514 (-)
kdm7aa kdm7a coding downstream 493935 3919302 ~ 3945301 (-)
kmt2e kmt2e coding downstream 532583 3857515 ~ 3906653 (-)
orc5 orc5 coding downstream 627620 3798341 ~ 3811616 (-)
hcls1 LOC108279643,LOC107095911,LOC105918344,LOC103358095,LOC102201149,LOC102292035,LOC101481917 coding downstream 683379 3738884 ~ 3755857 (-)
psmc2 psmc2,LOC103382982 coding upstream 344368 4784128 ~ 4792797 (-)
gys2 gys2,LOC107659841,LOC107694689 coding upstream 457510 4897270 ~ 4917780 (-)
ldhba ldhb,ldhba,LOC107659842,LOC107589975,LOC107725606,LOC107586539,LOC107744904,LOC107694687 coding upstream 485956 4925716 ~ 4938813 (-)
slc25a3a slc25a3a,slc25a3,LOC108279629,LOC108437945,LOC107732290 coding upstream 514531 4954291 ~ 4965093 (-)
strap strap,LOC107744907,LOC107586834,LOC107725662,LOC107694684 coding upstream 548721 4988481 ~ 5003791 (-)
LOC117599558 LOC108279645 non-coding downstream 9283 4429054 ~ 4429953 (-)
LOC117599560 LOC108279645 non-coding downstream 14543 4424194 ~ 4424693 (-)
G276556 LOC108279645,LOC108274854 non-coding downstream 24120 4400123 ~ 4415116 (-)
LOC117599559 LOC108279645 non-coding downstream 35121 4403511 ~ 4404115 (-)
LOC117599550 LOC108279645 non-coding downstream 39301 4399281 ~ 4399935 (-)
LOC117599556 LOC108279645 non-coding upstream 9261 4449021 ~ 4449660 (-)
G276570 LOC108279645,LOC108274854 non-coding upstream 10122 4449882 ~ 4502862 (-)
LOC117599557 LOC108279645 non-coding upstream 16547 4456307 ~ 4457044 (-)
LOC117599583 LOC108279645 non-coding upstream 37927 4477687 ~ 4478367 (-)
LOC117599584 LOC108279645 non-coding upstream 55205 4494965 ~ 4495572 (-)
LOC117599551 LOC108279645 other downstream 77294 4361332 ~ 4361942 (-)
LOC113523868 NA other downstream 95691 4331260 ~ 4343545 (-)
G276530 slc35e3,LOC107556774,LOC107710682 other downstream 138712 4297860 ~ 4300524 (-)
G276421 NA other downstream 347373 4082278 ~ 4091863 (-)
golgb1 LOC108279640 other downstream 609834 3759211 ~ 3829402 (-)
LOC117599578 LOC108279645 other upstream 26301 4466061 ~ 4482565 (-)
G276650 LOC108279602 other upstream 295171 4734931 ~ 4738999 (-)
tmpoa LOC108279628 other upstream 526472 4966232 ~ 4984315 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other upstream 1541378 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other upstream 1542532 5982292 ~ 5984564 (-)

Expression


Co-expression Network