LOC117599554 (LOC108279645)


Basic Information

Item Value
gene id LOC117599554
gene name LOC108279645
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4386342 ~ 4387104 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117599554
ctgctcagaaacttcacccacagcaaccatgactttgatcagcgtcttcatctgcacactggcccTCTGGACTCAAGgatccagaggtcaggtgactgtgactcaGACTCCTTCAGTGCAAACTGTTGTTCCAGGAAACACAGTCACCATCAACTGTAGGACCAGTAGCAGTGTGTATCATGGTAACAACCTAGACTGGTACCtgcagaaacctggagaagcCCCTAAACCCCTGATCCATCAGACTACTAGCTTACAGTCAGGGACTCCAGCTCGTTTCAGAGGCAGTGGATCTAATACTGActtcactctgaccatcagtggagtccaaactgaagatgcaggagattactactgtcagagtaAACATTATATCAGTAGTAGCTGggtgttcacacagtgttagagcGGGGTACAAAAACCTCGGTCAGTGAGAGTGCACAGAGaagcactgctgcagctgggagcgactgcaggtgctgagggggaggatgtgatacagcacaatcacacacactgtggacgagagaaaacacaccacactaactcactaatgcacacacacacatctgtgagAGGAGTCCACCTTTCTCAGCTGTGGACATACAAACAATTCCTGATCATTCTGATTAACTGCTTAGTAATtatatttatcacattttagA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117599554 True 665 V_segment 0.47 2 4386342 4387104

Neighbor

gene id symbol gene type direction distance location
cd36 cd36 coding downstream 325828 4044706 ~ 4060514 (-)
kdm7aa kdm7a coding downstream 441041 3919302 ~ 3945301 (-)
kmt2e kmt2e coding downstream 479689 3857515 ~ 3906653 (-)
orc5 orc5 coding downstream 574726 3798341 ~ 3811616 (-)
hcls1 LOC108279643,LOC107095911,LOC105918344,LOC103358095,LOC102201149,LOC102292035,LOC101481917 coding downstream 630485 3738884 ~ 3755857 (-)
psmc2 psmc2,LOC103382982 coding upstream 397024 4784128 ~ 4792797 (-)
gys2 gys2,LOC107659841,LOC107694689 coding upstream 510166 4897270 ~ 4917780 (-)
ldhba ldhb,ldhba,LOC107659842,LOC107589975,LOC107725606,LOC107586539,LOC107744904,LOC107694687 coding upstream 538612 4925716 ~ 4938813 (-)
slc25a3a slc25a3a,slc25a3,LOC108279629,LOC108437945,LOC107732290 coding upstream 567187 4954291 ~ 4965093 (-)
strap strap,LOC107744907,LOC107586834,LOC107725662,LOC107694684 coding upstream 601377 4988481 ~ 5003791 (-)
G276515 NA non-coding downstream 63661 4278059 ~ 4322681 (-)
G276538 NA non-coding downstream 77305 4308588 ~ 4309037 (-)
G276497 NA non-coding downstream 130398 4255200 ~ 4255944 (-)
G276420 NA non-coding downstream 243394 4070448 ~ 4142948 (-)
G276447 NA non-coding downstream 260761 4124465 ~ 4125581 (-)
LOC117599550 LOC108279645 non-coding upstream 12177 4399281 ~ 4399935 (-)
G276556 LOC108279645,LOC108274854 non-coding upstream 13019 4400123 ~ 4415116 (-)
LOC117599559 LOC108279645 non-coding upstream 16407 4403511 ~ 4404115 (-)
G276557 LOC108279645,LOC108274854 non-coding upstream 27355 4414459 ~ 4557257 (-)
LOC117599560 LOC108279645 non-coding upstream 37090 4424194 ~ 4424693 (-)
LOC117599551 LOC108279645 other downstream 24400 4361332 ~ 4361942 (-)
LOC113523868 NA other downstream 42797 4331260 ~ 4343545 (-)
G276530 slc35e3,LOC107556774,LOC107710682 other downstream 85818 4297860 ~ 4300524 (-)
G276421 NA other downstream 294479 4082278 ~ 4091863 (-)
golgb1 LOC108279640 other downstream 556940 3759211 ~ 3829402 (-)
LOC117599578 LOC108279645 other upstream 78957 4466061 ~ 4482565 (-)
G276650 LOC108279602 other upstream 347827 4734931 ~ 4738999 (-)
tmpoa LOC108279628 other upstream 579128 4966232 ~ 4984315 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other upstream 1594034 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other upstream 1595188 5982292 ~ 5984564 (-)

Expression


Co-expression Network