LOC117599555 (LOC108279645)


Basic Information

Item Value
gene id LOC117599555
gene name LOC108279645
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4357539 ~ 4457121 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117599555
CATGCTTCAGTGCTctgcgagtgtttatagccctgtgactttaacacttcatgactgagagctgctgctcagcaacttcacccacagcaaccATGACTTTGATCAGCGCcttcatctgcacactggcccTCTGGACTCAAGgatccagaggtcaggtgactgttACTCAGACTCCTTCAGTGCAAACTGTTGTTCCAGGAAACACAGTCACCATCAACTGTAGAACCAGTAGCAGAGTGAGTAGTGGTACTGGTCTCACATGGTACTTGCTGaaacctggagaagctcctaaatTCCTGATCTATGGTGCTACTAGCTTATACTCAGGGACTCCAGCTCGTTTCACAGTCAGTGGATCTAATACTGActtcactctgaccatcagtggagtccagactgaagatgcaggagattactactgtcagagtttaCATCAGATCAGTAGTAGCTGggtgttcacacagtgttagagcGTGGTACAAAAACCTCGGTCAGTGAGAGTGCACAGAGaagcactgctgcagctgggagcgactgcaggtgctgagggggaggatgtgatacagcacaatgacacacactgtggacgagagaaaacacaccacactaactcactaatgcacacacacatctgttagaGGAGTCCACCTTTCTCAGCTGTGGACATACAAACATTTCCTGATCATTCTGATTAACTGCTTAGTAATTATCTTTATCACATTTTAACTTAATGcgatat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117599555 True 739 V_segment 0.47 3 4357539 4457121

Neighbor

gene id symbol gene type direction distance location
cd36 cd36 coding downstream 297025 4044706 ~ 4060514 (-)
kdm7aa kdm7a coding downstream 412238 3919302 ~ 3945301 (-)
kmt2e kmt2e coding downstream 450886 3857515 ~ 3906653 (-)
orc5 orc5 coding downstream 545923 3798341 ~ 3811616 (-)
hcls1 LOC108279643,LOC107095911,LOC105918344,LOC103358095,LOC102201149,LOC102292035,LOC101481917 coding downstream 601682 3738884 ~ 3755857 (-)
psmc2 psmc2,LOC103382982 coding upstream 327007 4784128 ~ 4792797 (-)
gys2 gys2,LOC107659841,LOC107694689 coding upstream 440149 4897270 ~ 4917780 (-)
ldhba ldhb,ldhba,LOC107659842,LOC107589975,LOC107725606,LOC107586539,LOC107744904,LOC107694687 coding upstream 468595 4925716 ~ 4938813 (-)
slc25a3a slc25a3a,slc25a3,LOC108279629,LOC108437945,LOC107732290 coding upstream 497170 4954291 ~ 4965093 (-)
strap strap,LOC107744907,LOC107586834,LOC107725662,LOC107694684 coding upstream 531360 4988481 ~ 5003791 (-)
G276515 NA non-coding downstream 34858 4278059 ~ 4322681 (-)
G276538 NA non-coding downstream 48502 4308588 ~ 4309037 (-)
G276497 NA non-coding downstream 101595 4255200 ~ 4255944 (-)
G276420 NA non-coding downstream 214591 4070448 ~ 4142948 (-)
G276447 NA non-coding downstream 231958 4124465 ~ 4125581 (-)
LOC117599583 LOC108279645 non-coding upstream 20566 4477687 ~ 4478367 (-)
LOC117599584 LOC108279645 non-coding upstream 37844 4494965 ~ 4495572 (-)
LOC117599585 LOC108279645 non-coding upstream 43276 4500397 ~ 4501320 (-)
LOC117599577 LOC108279645 non-coding upstream 50318 4507439 ~ 4508169 (-)
LOC113525246 LOC108279645 non-coding upstream 56810 4513931 ~ 4514617 (-)
LOC113523868 NA other downstream 13994 4331260 ~ 4343545 (-)
G276530 slc35e3,LOC107556774,LOC107710682 other downstream 57015 4297860 ~ 4300524 (-)
G276421 NA other downstream 265676 4082278 ~ 4091863 (-)
golgb1 LOC108279640 other downstream 528137 3759211 ~ 3829402 (-)
G276340 NA other downstream 620462 3736130 ~ 3737077 (-)
LOC117599578 LOC108279645 other upstream 8940 4466061 ~ 4482565 (-)
G276650 LOC108279602 other upstream 277810 4734931 ~ 4738999 (-)
tmpoa LOC108279628 other upstream 509111 4966232 ~ 4984315 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other upstream 1524017 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other upstream 1525171 5982292 ~ 5984564 (-)

Expression


Co-expression Network