LOC117599576 (LOC108279645)


Basic Information

Item Value
gene id LOC117599576
gene name LOC108279645
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4544541 ~ 4545154 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117599576
acacacacacacacactttgcattgGCAGCCCATGCTTCAGTGCTctgcgagtgtttatagccctgtgactttaacacttcatgactgagagctgctgctcagcaacttcacccacagcaaccatgactttgatcagcgtcttcatctgcacactggcccTCTGGACTCAAGgatccagaggtcaggtgactgtgactcaGACTCCTTCAGTGCAAACTGTTGTTCCAGGAAACACAGTCACCATCAACTGTAGAACCAGTAGCAGTGTGTATGCTGGTAACTACCTACACTGGTACCtgcagaaacctggagaagctcctaaactcctgatctaTGATGCTACTAGCTTATACTCAGGGACTCCAGCTCGTTTCAGAGGCAGTGGATCTAATACTGActtcactctgaccatcagtggagtccagactgaagatgcaggagattactactgtcagagtttaCATGAGATCAGTAGTAGCTAtgtgttcacacagtgttagagcGTGGTACAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117599576 True 516 V_segment 0.47 2 4544541 4545154

Neighbor

gene id symbol gene type direction distance location
cd36 cd36 coding downstream 484027 4044706 ~ 4060514 (-)
kdm7aa kdm7a coding downstream 599240 3919302 ~ 3945301 (-)
kmt2e kmt2e coding downstream 637888 3857515 ~ 3906653 (-)
orc5 orc5 coding downstream 732925 3798341 ~ 3811616 (-)
hcls1 LOC108279643,LOC107095911,LOC105918344,LOC103358095,LOC102201149,LOC102292035,LOC101481917 coding downstream 788684 3738884 ~ 3755857 (-)
psmc2 psmc2,LOC103382982 coding upstream 238974 4784128 ~ 4792797 (-)
gys2 gys2,LOC107659841,LOC107694689 coding upstream 352116 4897270 ~ 4917780 (-)
ldhba ldhb,ldhba,LOC107659842,LOC107589975,LOC107725606,LOC107586539,LOC107744904,LOC107694687 coding upstream 380562 4925716 ~ 4938813 (-)
slc25a3a slc25a3a,slc25a3,LOC108279629,LOC108437945,LOC107732290 coding upstream 409137 4954291 ~ 4965093 (-)
strap strap,LOC107744907,LOC107586834,LOC107725662,LOC107694684 coding upstream 443327 4988481 ~ 5003791 (-)
LOC117599582 LOC108279645 non-coding downstream 5717 4527788 ~ 4538824 (-)
LOC117599579 LOC108279645 non-coding downstream 25558 4517902 ~ 4518983 (-)
LOC113525246 LOC108279645 non-coding downstream 29924 4513931 ~ 4514617 (-)
LOC117599577 LOC108279645 non-coding downstream 36372 4507439 ~ 4508169 (-)
G276570 LOC108279645,LOC108274854 non-coding downstream 41679 4449882 ~ 4502862 (-)
LOC117599444 LOC108279645 non-coding upstream 9465 4554619 ~ 4555095 (-)
LOC117599581 LOC108279645 non-coding upstream 31316 4576470 ~ 4577038 (-)
LOC117599580 LOC108279645 non-coding upstream 41102 4586256 ~ 4586992 (-)
G276749 NA non-coding upstream 253505 4798659 ~ 4799157 (-)
G276755 prdm4 non-coding upstream 256753 4801907 ~ 4844371 (-)
LOC117599578 LOC108279645 other downstream 61976 4466061 ~ 4482565 (-)
LOC117599555 LOC108279645 other downstream 87420 4357539 ~ 4457121 (-)
LOC117599551 LOC108279645 other downstream 182599 4361332 ~ 4361942 (-)
LOC113523868 NA other downstream 200996 4331260 ~ 4343545 (-)
G276530 slc35e3,LOC107556774,LOC107710682 other downstream 244017 4297860 ~ 4300524 (-)
G276650 LOC108279602 other upstream 189777 4734931 ~ 4738999 (-)
tmpoa LOC108279628 other upstream 421078 4966232 ~ 4984315 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other upstream 1435984 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other upstream 1437138 5982292 ~ 5984564 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 2876834 7421988 ~ 7500079 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) LOC122330425 NA misc NC_056723.1 CM032092.1 13992252 ~ 13992849 (-)