LOC117599578 (LOC108279645)


Basic Information

Item Value
gene id LOC117599578
gene name LOC108279645
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4466061 ~ 4482565 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117599578
atgactgagagctgctgctcagcaacttcacccacagcaaccatgactttgatcagcgtcttcatctgcacactggcccTCTGGACTCAAGgatccagaggtcaggtgactgtgactcaGACTCCTTCAGTGCAAACTGTTGTTCCAGGAAACACAGTCACCATCAACTGTAGAACCAGTAGCAGAGTGCACGGTGGTGGCAATATACAGTGGTACCTGCTGaaacctggagaagctcctaaactcctgatctaCTGGGCTACTAGCTTACAGTCAGGAACTCCAGCTCGTTTCAGAGGCAGTGGATCTGATACTGActtcactctgaccatcagtggagtccagactgaagatgcaggagattactactgtcagagtggACATGAGATCAGTAGTAGCTGggtgttcacacagtgttagagcGTGGTACAAAAACCTCAGTCAGTGAGAGTGCACAGAGaagcactgctgcagctgggagcgactgcaggtgctgagggggaggatgtgatacagcacaatgacacacactgtggatgagagaaaacacaccacactaactcactaatgcacacacacacatctgttagaGGAGTCCACCTTTCTCAGCTGTGGACATACAAACAATTCCTGATCATTCTCATTAACTGCTTAGTAATTACCTTTAtcccattttaaatatttaagaaagtatttattatatttacattttgttgcATATATTTCTAACCAAAAAACATCTTTATGGTTAATATCAAACACTATTATagagttaatattttattataataattataatattaatattccttAAATAGACCCACATTATAAAGCTGAGACTGACATTTAACTGAACATTTCTTTACTTATTAACAAACAATTAGATAATGATTAATTCAGTCTAGCATGTTCAAATCAAATAATCCagagaattatttaaaagtataacaaaattaatttataatttaatataatatatatataataaatttctaaaagctgtaaaatctaataaataaataaataaacatgccaATATCCCTATAAAGGGTGCATCTCTTTCCACTGTGACATACATATagagggaataaaacacattgggcatgttgatataggaaaataatccatggtGAAGTGGTGTCCCCCTTTAGCAATAAATTTGTTTACTTCCGGGTCACTAGGGGTGTCACTGGGGCATTTTGTGGGTCAATCTGTGTAAACATGGCActttaaacacaaaagaaagagaaagtgagatatATTGAGACTTTAGATGATGTTTCAAAGGCAAGATACTTAACAAAACTTGAGTTAATAGGTTCAACACACCGAACATAACAACTGACATCTCCTCATCTCCTTACtgctaaggtttttttttattcatcttataaaaatgtaactttgcACCTCAAATgctgaatgtactgtatattatatgaataaaaGCTACACTTTACTCTATGAA
>TU327896
agaaaacacaccacactaactcactaatgcacacacacatctgttagaGGAGTCCACCTTTCTCAGCTGTGGACATACAAACAATTCCTGATCATTCTCATTAACTGCTTAGTAATTACCTTTAtcccattttaaatatttaagaaagtatttattatatttacattttgttgcATATATTTCTAACCAAAAAACATCTTTATGGTTAATATCAAACACTATTATagagttaatattttattataataattataatattaatattccttAAATAGACCCACATTATAAAGCTGAGACTGACATTTAACTGAACATTTCTTTACTTATTAACAAACAATTAGATAATGATTAATTCAGTCTAGCATGTTCAAATCAAATAATCCagagaattatttaaaagtataacaaaattaatttataatttaatataatatatatataataaatttctaaaagctgtaaaatctaataaataaataaataaacatgccaATATCCCTATAAAGGGTGCATCTCTTTCCACTGTGACATACATATagagggaataaaacacattgggcatgttgatataggaaaataatccatggtGAAGTGGTGTCCCCCTTTAGCAATAAATTTGTTTACTTCCGGGTCACTAGGGGTGTCACTGGGGCATTTTGTGGGTCAATCTGTGTAAACATGGCActttaaacacaaaagaaagagaaagtgag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117599578 True 1468 V_segment 0.37 2 4466061 4467626
TU327896 False 713 lncRNA 0.29 2 4466273 4482565

Neighbor

gene id symbol gene type direction distance location
cd36 cd36 coding downstream 405547 4044706 ~ 4060514 (-)
kdm7aa kdm7a coding downstream 520760 3919302 ~ 3945301 (-)
kmt2e kmt2e coding downstream 559408 3857515 ~ 3906653 (-)
orc5 orc5 coding downstream 654445 3798341 ~ 3811616 (-)
hcls1 LOC108279643,LOC107095911,LOC105918344,LOC103358095,LOC102201149,LOC102292035,LOC101481917 coding downstream 710204 3738884 ~ 3755857 (-)
psmc2 psmc2,LOC103382982 coding upstream 301563 4784128 ~ 4792797 (-)
gys2 gys2,LOC107659841,LOC107694689 coding upstream 414705 4897270 ~ 4917780 (-)
ldhba ldhb,ldhba,LOC107659842,LOC107589975,LOC107725606,LOC107586539,LOC107744904,LOC107694687 coding upstream 443151 4925716 ~ 4938813 (-)
slc25a3a slc25a3a,slc25a3,LOC108279629,LOC108437945,LOC107732290 coding upstream 471726 4954291 ~ 4965093 (-)
strap strap,LOC107744907,LOC107586834,LOC107725662,LOC107694684 coding upstream 505916 4988481 ~ 5003791 (-)
LOC117599557 LOC108279645 non-coding downstream 9017 4456307 ~ 4457044 (-)
LOC117599556 LOC108279645 non-coding downstream 16401 4449021 ~ 4449660 (-)
LOC117599553 LOC108279645 non-coding downstream 26301 4439236 ~ 4439760 (-)
LOC117599558 LOC108279645 non-coding downstream 36108 4429054 ~ 4429953 (-)
LOC117599560 LOC108279645 non-coding downstream 41368 4424194 ~ 4424693 (-)
LOC117599584 LOC108279645 non-coding upstream 12400 4494965 ~ 4495572 (-)
LOC117599585 LOC108279645 non-coding upstream 17832 4500397 ~ 4501320 (-)
LOC117599577 LOC108279645 non-coding upstream 24874 4507439 ~ 4508169 (-)
LOC113525246 LOC108279645 non-coding upstream 31366 4513931 ~ 4514617 (-)
LOC117599579 LOC108279645 non-coding upstream 35337 4517902 ~ 4518983 (-)
LOC117599555 LOC108279645 other downstream 8940 4357539 ~ 4457121 (-)
LOC117599551 LOC108279645 other downstream 104119 4361332 ~ 4361942 (-)
LOC113523868 NA other downstream 122516 4331260 ~ 4343545 (-)
G276530 slc35e3,LOC107556774,LOC107710682 other downstream 165537 4297860 ~ 4300524 (-)
G276421 NA other downstream 374198 4082278 ~ 4091863 (-)
G276650 LOC108279602 other upstream 252366 4734931 ~ 4738999 (-)
tmpoa LOC108279628 other upstream 483667 4966232 ~ 4984315 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other upstream 1498573 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other upstream 1499727 5982292 ~ 5984564 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 2939423 7421988 ~ 7500079 (-)

Expression


Co-expression Network