LOC117599582 (LOC108279645)


Basic Information

Item Value
gene id LOC117599582
gene name LOC108279645
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4527788 ~ 4538824 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117599582
cacacacacacgcacacactttgCATTGGCAGCCCATGCTTCAGTGCTctgcgagtgtttatagccctgtgactttaacacttcatgactgagagctgctgctcagcaacttcacccacagcaaccatgactttgatcagcgtcttcatctgcacactggcccTCTGGACTCAAGgatccagaggtcaggtgactgtgactcaGACTCCTTCAGCGCAAACTGTTGTTCCAGGAAACACAGTCACCATCAACTGTAGAACCAGTAGCAGGGTGTATAGTGGTAACAGCCTACACTGGTACCtgcagaaacctggagaagTTCCTAATCTCCTGATCTATGATGCTACTAGCTTATATTCAGGGACTCCAGCTCGTTTCAGAGGCAGTGGATCTGATACTGACTTCACTCTaaccatcagtggagtccagactgaagatgcaggagattactactgtcagagttaccATGAGATCAGTAGTAGCTATGTGTTCTCACAGTGTTAGAGCGTGGTACAAAAACCTCGGTCAGTGAGAGTGCACAGAGaagcactgctgcagctgggagcgactgcaggtgctgagggggaggatgtgatacagcacaatgacacacactgtggacgagagaaaacacaccacactaactcactaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117599582 True 653 V_segment 0.49 3 4527788 4538824

Neighbor

gene id symbol gene type direction distance location
cd36 cd36 coding downstream 467274 4044706 ~ 4060514 (-)
kdm7aa kdm7a coding downstream 582487 3919302 ~ 3945301 (-)
kmt2e kmt2e coding downstream 621135 3857515 ~ 3906653 (-)
orc5 orc5 coding downstream 716172 3798341 ~ 3811616 (-)
hcls1 LOC108279643,LOC107095911,LOC105918344,LOC103358095,LOC102201149,LOC102292035,LOC101481917 coding downstream 771931 3738884 ~ 3755857 (-)
psmc2 psmc2,LOC103382982 coding upstream 245304 4784128 ~ 4792797 (-)
gys2 gys2,LOC107659841,LOC107694689 coding upstream 358446 4897270 ~ 4917780 (-)
ldhba ldhb,ldhba,LOC107659842,LOC107589975,LOC107725606,LOC107586539,LOC107744904,LOC107694687 coding upstream 386892 4925716 ~ 4938813 (-)
slc25a3a slc25a3a,slc25a3,LOC108279629,LOC108437945,LOC107732290 coding upstream 415467 4954291 ~ 4965093 (-)
strap strap,LOC107744907,LOC107586834,LOC107725662,LOC107694684 coding upstream 449657 4988481 ~ 5003791 (-)
LOC117599579 LOC108279645 non-coding downstream 8805 4517902 ~ 4518983 (-)
LOC113525246 LOC108279645 non-coding downstream 13171 4513931 ~ 4514617 (-)
LOC117599577 LOC108279645 non-coding downstream 19619 4507439 ~ 4508169 (-)
G276570 LOC108279645,LOC108274854 non-coding downstream 24926 4449882 ~ 4502862 (-)
LOC117599585 LOC108279645 non-coding downstream 26468 4500397 ~ 4501320 (-)
LOC117599576 LOC108279645 non-coding upstream 5717 4544541 ~ 4545154 (-)
LOC117599444 LOC108279645 non-coding upstream 15795 4554619 ~ 4555095 (-)
LOC117599581 LOC108279645 non-coding upstream 37646 4576470 ~ 4577038 (-)
LOC117599580 LOC108279645 non-coding upstream 47432 4586256 ~ 4586992 (-)
G276749 NA non-coding upstream 259835 4798659 ~ 4799157 (-)
LOC117599578 LOC108279645 other downstream 45223 4466061 ~ 4482565 (-)
LOC117599555 LOC108279645 other downstream 70667 4357539 ~ 4457121 (-)
LOC117599551 LOC108279645 other downstream 165846 4361332 ~ 4361942 (-)
LOC113523868 NA other downstream 184243 4331260 ~ 4343545 (-)
G276530 slc35e3,LOC107556774,LOC107710682 other downstream 227264 4297860 ~ 4300524 (-)
G276650 LOC108279602 other upstream 196107 4734931 ~ 4738999 (-)
tmpoa LOC108279628 other upstream 427408 4966232 ~ 4984315 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other upstream 1442314 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other upstream 1443468 5982292 ~ 5984564 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 2883164 7421988 ~ 7500079 (-)

Expression


Co-expression Network