LOC117599583 (LOC108279645)


Basic Information

Item Value
gene id LOC117599583
gene name LOC108279645
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4477687 ~ 4478367 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117599583
gcagtgcacacacacacacacacacacacactttgcattgGTAGCCCATGCTTCAGTGCTctgcgagtgtttatagccctgtgactttaacacttcatgactgagagctgctgctcagcaacttcacccacagcaaccatgactttgatcagcgtcttcatctgcacactggcccTCTGGACTCAAGgatccagaggtcaggtgactgtgactcaGACTCCTTCAGTGCAAACTCTTGTTCCGGGAAACACAGTCACCATCAACTGTAGAACCAGTAGCAGAGTGTATAGTGGTAACCGTCTCGCCTGGTACCtgcagaaacctggagaagctcctaaactcctgatctaCTTGGCTGATAGCTTACACTCAGGGACtccagctcgtttcagtggcagtggatctaATACTGActtcactctgaccatcagtggagtccagactgaagatgcaggagattactactgtcagagtttcCATGAGATCAGTAGTAGCTATGTGTTTACACAGTGTTAGAGCGTGGTACAAAAACCTCGGTCAGTGAGAGTGCACAGAGaagcactgctgcagctgggagcgACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117599583 True 583 V_segment 0.50 2 4477687 4478367

Neighbor

gene id symbol gene type direction distance location
cd36 cd36 coding downstream 417173 4044706 ~ 4060514 (-)
kdm7aa kdm7a coding downstream 532386 3919302 ~ 3945301 (-)
kmt2e kmt2e coding downstream 571034 3857515 ~ 3906653 (-)
orc5 orc5 coding downstream 666071 3798341 ~ 3811616 (-)
hcls1 LOC108279643,LOC107095911,LOC105918344,LOC103358095,LOC102201149,LOC102292035,LOC101481917 coding downstream 721830 3738884 ~ 3755857 (-)
psmc2 psmc2,LOC103382982 coding upstream 305761 4784128 ~ 4792797 (-)
gys2 gys2,LOC107659841,LOC107694689 coding upstream 418903 4897270 ~ 4917780 (-)
ldhba ldhb,ldhba,LOC107659842,LOC107589975,LOC107725606,LOC107586539,LOC107744904,LOC107694687 coding upstream 447349 4925716 ~ 4938813 (-)
slc25a3a slc25a3a,slc25a3,LOC108279629,LOC108437945,LOC107732290 coding upstream 475924 4954291 ~ 4965093 (-)
strap strap,LOC107744907,LOC107586834,LOC107725662,LOC107694684 coding upstream 510114 4988481 ~ 5003791 (-)
LOC117599557 LOC108279645 non-coding downstream 20643 4456307 ~ 4457044 (-)
LOC117599556 LOC108279645 non-coding downstream 28027 4449021 ~ 4449660 (-)
LOC117599553 LOC108279645 non-coding downstream 37927 4439236 ~ 4439760 (-)
LOC117599558 LOC108279645 non-coding downstream 47734 4429054 ~ 4429953 (-)
LOC117599560 LOC108279645 non-coding downstream 52994 4424194 ~ 4424693 (-)
LOC117599584 LOC108279645 non-coding upstream 16598 4494965 ~ 4495572 (-)
LOC117599585 LOC108279645 non-coding upstream 22030 4500397 ~ 4501320 (-)
LOC117599577 LOC108279645 non-coding upstream 29072 4507439 ~ 4508169 (-)
LOC113525246 LOC108279645 non-coding upstream 35564 4513931 ~ 4514617 (-)
LOC117599579 LOC108279645 non-coding upstream 39535 4517902 ~ 4518983 (-)
LOC117599555 LOC108279645 other downstream 20566 4357539 ~ 4457121 (-)
LOC117599551 LOC108279645 other downstream 115745 4361332 ~ 4361942 (-)
LOC113523868 NA other downstream 134142 4331260 ~ 4343545 (-)
G276530 slc35e3,LOC107556774,LOC107710682 other downstream 177163 4297860 ~ 4300524 (-)
G276421 NA other downstream 385824 4082278 ~ 4091863 (-)
G276650 LOC108279602 other upstream 256564 4734931 ~ 4738999 (-)
tmpoa LOC108279628 other upstream 487865 4966232 ~ 4984315 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other upstream 1502771 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other upstream 1503925 5982292 ~ 5984564 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 2943621 7421988 ~ 7500079 (-)

Expression


Co-expression Network