LOC117599585 (LOC108279645)


Basic Information

Item Value
gene id LOC117599585
gene name LOC108279645
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4500397 ~ 4501320 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117599585
gcaaccatgactttgatcagcgtcttcatctgcacactggcccTCTGGACTCAAGgatccagaggtcaggtgactgttACTCAGACTCCTTCAGTGCAAACTGTTGTTCCAGGAAACACAGTCACCATCAACTGTAGAACCAGTAGCAGTGTGCTTAATGGTAACTACCTAGCCTGGTATCtgcagaaacctggagaagctcctaaactcctgatctaTACTGCTACTAGCTTACAGTCAGGAACTCCAGCTCGTTTCAGAGGCAGTGGATCTAATACTGActtcactctgaccatcagtggagtccagactgaagatgcaggagattactactgtcagagtgaACATTATATCAGTAGTAGCTAtgtgttcacacagtgttagagcGTGGTACAAAAACCTTGGTCAGTGAGAGTGCACAGAGaagcactgctgcagctgggagcgactgcaggtgctgagggggaggatgtgatacagcacaatgacacacactgtggacgagagaaaacacaccacactaactcactaatgcacacacacacatctgtgagAGGAGTCCACCTTTCTCAGCTGTGGACATACAAACAATTCCTGATCATTCTGATTAACTGCTTAGTAATTATCTTTAtcccattttaaaaatttaagaaagaatttatttgcattttgttgCATATATTTCTAACCAAAAAACGTATTTATGGTTAATATCAAAAACTATTATAgagttaattttttattataataattttaatattaatattcattaaatagaTCCACATTATGGAGCTGAGACTGAAATTTAACTGgacatttctttaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117599585 True 826 V_segment 0.40 2 4500397 4501320

Neighbor

gene id symbol gene type direction distance location
cd36 cd36 coding downstream 439883 4044706 ~ 4060514 (-)
kdm7aa kdm7a coding downstream 555096 3919302 ~ 3945301 (-)
kmt2e kmt2e coding downstream 593744 3857515 ~ 3906653 (-)
orc5 orc5 coding downstream 688781 3798341 ~ 3811616 (-)
hcls1 LOC108279643,LOC107095911,LOC105918344,LOC103358095,LOC102201149,LOC102292035,LOC101481917 coding downstream 744540 3738884 ~ 3755857 (-)
psmc2 psmc2,LOC103382982 coding upstream 282808 4784128 ~ 4792797 (-)
gys2 gys2,LOC107659841,LOC107694689 coding upstream 395950 4897270 ~ 4917780 (-)
ldhba ldhb,ldhba,LOC107659842,LOC107589975,LOC107725606,LOC107586539,LOC107744904,LOC107694687 coding upstream 424396 4925716 ~ 4938813 (-)
slc25a3a slc25a3a,slc25a3,LOC108279629,LOC108437945,LOC107732290 coding upstream 452971 4954291 ~ 4965093 (-)
strap strap,LOC107744907,LOC107586834,LOC107725662,LOC107694684 coding upstream 487161 4988481 ~ 5003791 (-)
LOC117599584 LOC108279645 non-coding downstream 4825 4494965 ~ 4495572 (-)
LOC117599583 LOC108279645 non-coding downstream 22030 4477687 ~ 4478367 (-)
LOC117599557 LOC108279645 non-coding downstream 43353 4456307 ~ 4457044 (-)
LOC117599556 LOC108279645 non-coding downstream 50737 4449021 ~ 4449660 (-)
LOC117599553 LOC108279645 non-coding downstream 60637 4439236 ~ 4439760 (-)
LOC117599577 LOC108279645 non-coding upstream 6119 4507439 ~ 4508169 (-)
LOC113525246 LOC108279645 non-coding upstream 12611 4513931 ~ 4514617 (-)
LOC117599579 LOC108279645 non-coding upstream 16582 4517902 ~ 4518983 (-)
LOC117599582 LOC108279645 non-coding upstream 26468 4527788 ~ 4538824 (-)
LOC117599576 LOC108279645 non-coding upstream 43221 4544541 ~ 4545154 (-)
LOC117599578 LOC108279645 other downstream 17832 4466061 ~ 4482565 (-)
LOC117599555 LOC108279645 other downstream 43276 4357539 ~ 4457121 (-)
LOC117599551 LOC108279645 other downstream 138455 4361332 ~ 4361942 (-)
LOC113523868 NA other downstream 156852 4331260 ~ 4343545 (-)
G276530 slc35e3,LOC107556774,LOC107710682 other downstream 199873 4297860 ~ 4300524 (-)
G276650 LOC108279602 other upstream 233611 4734931 ~ 4738999 (-)
tmpoa LOC108279628 other upstream 464912 4966232 ~ 4984315 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other upstream 1479818 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other upstream 1480972 5982292 ~ 5984564 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 2920668 7421988 ~ 7500079 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) LOC122332333 NA misc NW_025047689.1 JAEQBD010000034.1 38735 ~ 39286 (+)