G275028


Basic Information

Item Value
gene id G275028
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 247323 ~ 280961 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU325915
CGTTTAATAATACTACAGCGAAGTGTCAGGTCTAAGCTTTTCCATAGAACTTTAATAGTGATGATGATTAGAAAGTGATTTAAAACGTTTTGCTGAAAATGTGGTCCGTTTTTCTGAGGAGCTTTACACAACAGATTTGTAAAAGAGCGATTTCTGAAATGGATtgttatattttactgtttaaacCCCGCCTCCTTCAAGAGAACCGCGTGTTATTCATCTCGGGGTTCTGCAGGTCTGCGTTTCTTTTTTCCGTTTGTCTTTAAGGTTTGGATAGAAAAACATAAACCGGCTCTGTatcattaaagcatttttttacagtatgtgtggatttaacataaaaatgatgtttaaataattaaatcttgTACAGATTCATTTCTTGATAGTTTTTGATACTGTGTAAGACGTATAAAGGGGCGTGGCTACGTATGAAGTCAGTTTATGATGTCACTAAATCATGATCTAGAACGCAATTTATTAGAGGAAACTTTTCCGTTCATTCTTCCATCAGTGTAATTTTCTAAgtgaccaccagagggcagtgTGAtaccactgaaacacacacagcggCAATAAGAGCGAGGTTCTGAAACTTTCTGAGGAACTAAAGTGGAGCAGGTTGTGTTTCCGTTAGCAGAAATGAAGCCACACG

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU325915 True 655 lncRNA 0.37 2 247323 280961

Neighbor

gene id symbol gene type direction distance location
cmah LOC108279485 coding downstream 82582 131691 ~ 164741 (-)
zdhhc17 zdhhc17,LOC102798393 coding downstream 139486 89473 ~ 107837 (-)
osbpl8 osbpl8,LOC107555879 coding downstream 197286 14021 ~ 50037 (-)
LOC117599422 LOC108279481,LOC108262260,LOC108279495 coding upstream 95496 376457 ~ 394253 (-)
LOC117599468 LOC108262260 coding upstream 141552 422513 ~ 475215 (-)
LOC117599469 LOC108262260 coding upstream 200613 481574 ~ 570011 (-)
LOC117595727 LOC108262260 coding upstream 382764 663725 ~ 683075 (-)
LOC113543469 LOC108279491,LOC108262260 coding upstream 405075 686036 ~ 694483 (-)
G274982 NA non-coding downstream 72625 168604 ~ 174698 (-)
G274968 NA non-coding downstream 164075 82623 ~ 83248 (-)
G274918 NA non-coding downstream 213626 31803 ~ 33697 (-)
G275024 NA non-coding upstream 10689 291650 ~ 292596 (-)
G275049 NA non-coding upstream 66253 347214 ~ 347449 (-)
G275134 NA non-coding upstream 101964 382925 ~ 679665 (-)
G275141 NA non-coding upstream 159832 440793 ~ 448307 (-)
G275126 NA non-coding upstream 206831 487792 ~ 488922 (-)
G274979 NA other downstream 101283 144583 ~ 146040 (-)
LOC113535352 LOC107729140 other upstream 473 281434 ~ 287052 (-)
LOC113531599 LOC108262260,LOC108279491,LOC108279481 other upstream 74013 354974 ~ 369037 (-)
LOC113531866 LOC108279481,LOC108262260,LOC108279491 other upstream 123000 403961 ~ 557687 (-)
LOC113532194 far1,LOC108279482,LOC107590516,LOC103366393 other upstream 234023 514984 ~ 525025 (-)
G275152 LOC108261384,LOC108261611,LOC108279477,LOC108262118,LOC108261705,LOC108262466 other upstream 255485 536446 ~ 539298 (-)

Expression


Co-expression Network