XLOC_005275 (BX000534.1)


Basic Information

Item Value
gene id XLOC_005275
gene name BX000534.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 16997206 ~ 16998442 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010135
gtttaaaaaagaaactgGATCAGCTGGAGTGCCACTTCACATGGGATATAAAAAAAGACGATCTAGACTTCACGAATCTCCTCAACAGACTTGAAGAACAAGACAAATTGGATCTAGGAAGTGAGGAAGGGGCTGCACGAGCGCAGTGCTCAATGGGATATCTAAAATTCCTTCTCGACTGCAAAGAAGAAGCCCTTACTCACCTGTCAAGATCTGAGGCACTCATCAAAGAAAACTTTGCAGACAACAATGACAAGGCTCTTATTGTGACCTATGGAAATTTTGCCTGGATAAACTACCACATGGAGAACTACACAGAGTGCGAACGTTACCTAAAGAAGCTTCAAAACATGTATGAGACATTTCCAATTGAGTCTTCAGCTGTTCCAGAGGTGCTTGGGGAGAAAGGATGGACTTATCTTAAATTCTCTCGTAAATATTATGACAAGGCAGCAGAAGTTTTTCAAAAAGCTGTGGAACTGGATCCAACAAATAGTGAGTGGAACGCTGGTTATGCCATCACTCTGTATCGCACTGAAACTAGTCAGCCTACTATAGATTCACCTGTGATCAAACAGCTGAGAAAGGCCATTGACCTGAACCCAGATgatgatgctctgagagtccttctaGGATTTAAACTTATGAATTGTTCTAAAGAATTGATGAAAGAGTCTGAGCAGCTGGTTGAGACAGCTTTGAATCAGTCCCCAGAACATCCAGATGTCATGAGATATGTTGGAATGTACCTCAGGGATCAAGGATCTGTAGACAGTTCTATTGCCCTTCTGGAGAAAGCACTTGAAAGATCACCAAACTCAAGCTTCATATGTCATCAGTTAGCAACAtgctatgagaaaaaaaaatttacttactGACAGAAAAATGTTACAAAGCTGGAGATCATGCTCGAAATCAAAGTATATACTATTTAGAACTGGCAACTTCCCTAAAACCTTCATTTATTCTTGCAATGTGTCAGCTCAGACTTCAGTACGGAGAGAGACATGACTTGCTTAAGGCAGAGGAACAGTTTGACAAAGCATTCAAGACAGCAAAAGATAAAAATGAGCATCTGCAGTCAGTCCATTTTTATTATGCCGAGTTCCAGCAATACAGTAAAAGTCGTGAGGATTTAGCTATTAAGCATTACAAGGAGTGCTTGACAATGAATCCAGATAGTAGTGAGGGGAATAGAAGTGCAAAGAAATTGATGAAAATTGCCAACAAACATCTT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096618

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010135 True 1237 unprocessed_pseudogene 0.40 1 16997206 16998442

Neighbor

gene id symbol gene type direction distance location
XLOC_005274 ifit12 coding downstream 6310 16989120 ~ 16990896 (-)
XLOC_005273 NA coding downstream 30398 16964656 ~ 16966808 (-)
XLOC_005271 zgc:174855 coding downstream 45560 16938807 ~ 16951646 (-)
XLOC_005272 NA coding downstream 53958 16942204 ~ 16943248 (-)
XLOC_005270 si:dkey-26g8.5 coding downstream 74044 16919411 ~ 16923162 (-)
XLOC_005276 ifit11 coding upstream 21463 17019905 ~ 17024079 (-)
XLOC_005277 ifit10 coding upstream 27284 17025726 ~ 17028255 (-)
XLOC_005278 ifit9 coding upstream 35052 17033494 ~ 17035339 (-)
XLOC_005279 stambpl1 coding upstream 118963 17117405 ~ 17152139 (-)
XLOC_005280 lipf coding upstream 160200 17158642 ~ 17201028 (-)
XLOC_005269 BX000534.2 non-coding downstream 95447 16901645 ~ 16901759 (-)
XLOC_005265 BX322603.1 non-coding downstream 250659 16743052 ~ 16746547 (-)
XLOC_005263 BX465840.2 non-coding downstream 342411 16654681 ~ 16654795 (-)
XLOC_005289 dre-mir-2192 non-coding upstream 708350 17706792 ~ 17706901 (-)
XLOC_005291 NA non-coding upstream 723359 17721801 ~ 17727540 (-)
XLOC_005295 NA non-coding upstream 1226092 18224534 ~ 18227730 (-)
XLOC_005298 NA non-coding upstream 1454765 18453207 ~ 18454407 (-)
XLOC_005303 AL772266.1 non-coding upstream 1739971 18738413 ~ 18738529 (-)

Expression


Co-expression Network