G275134


Basic Information

Item Value
gene id G275134
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 382925 ~ 679665 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU326060
gttgtttccttgactgacctgttccatgtctagTTGTTAGTAAACcactggtttctttctttttcaggacattccaaattattGTATTGGCTATTCCCAATGCTTGTGGAATgactctgattgattttccttcttttctcagcttccaaatggcttgcttttctcccatagacagctctctggtctttatgttggtttatcctttttaacaacaaatgcagtcttcacaggagaaacccagggctcaaaccaagagtagacattcagagctattaattctttaaacaatcaatctaacagggcaacaagaaacacctgtcagtcacatgttccaatatttttgatcacttgaaaaatgggtgggttcaaacaaaaggtgccatgttctaagttctTTAATACacctagatgtaaatatgaggaaatgaaagctgaaattctgatctgtcgtttcatattcatc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU326060 True 463 lncRNA 0.37 2 382925 679665

Neighbor

gene id symbol gene type direction distance location
cmah LOC108279485 coding downstream 218184 131691 ~ 164741 (-)
zdhhc17 zdhhc17,LOC102798393 coding downstream 275088 89473 ~ 107837 (-)
osbpl8 osbpl8,LOC107555879 coding downstream 332888 14021 ~ 50037 (-)
LOC113543469 LOC108279491,LOC108262260 coding upstream 6371 686036 ~ 694483 (-)
LOC117599425 LOC108261705,LOC108261555,LOC108261423,LOC108261687,LOC108279477,LOC108261384,LOC108262265 coding upstream 225582 905247 ~ 906730 (-)
LOC117599426 LOC108262466,LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108261400 coding upstream 227565 907230 ~ 907847 (-)
LOC117599470 LOC107667668 coding upstream 495645 1175310 ~ 1177234 (-)
LOC117599427 LOC108261400,LOC108261611,LOC108262466 coding upstream 562473 1242138 ~ 1255186 (-)
G275049 NA non-coding downstream 35476 347214 ~ 347449 (-)
G275024 NA non-coding downstream 90329 291650 ~ 292596 (-)
G275029 NA non-coding downstream 97694 250671 ~ 285231 (-)
G275028 NA non-coding downstream 101964 247323 ~ 280961 (-)
G274982 NA non-coding downstream 208227 168604 ~ 174698 (-)
G275167 cpsf6,LOC108279496,LOC107729149,LOC107555887,LOC106576649,LOC106593552 non-coding upstream 23666 703331 ~ 704306 (-)
G275168 NA non-coding upstream 24105 703770 ~ 705100 (-)
G275169 NA non-coding upstream 28666 708331 ~ 718266 (-)
G275170 NA non-coding upstream 38780 718445 ~ 719883 (-)
G275178 NA non-coding upstream 66785 746450 ~ 750995 (-)
LOC113531599 LOC108262260,LOC108279491,LOC108279481 other downstream 13888 354974 ~ 369037 (-)
LOC113535352 LOC107729140 other downstream 95873 281434 ~ 287052 (-)
LOC117599453 yeats4,LOC107555875,LOC107590554 other downstream 129080 248336 ~ 253845 (-)
G274979 NA other downstream 236885 144583 ~ 146040 (-)
LOC117599428 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other upstream 584084 1263749 ~ 1297899 (-)
LOC117599495 NA other upstream 602789 1282454 ~ 1282934 (-)
LOC117599432 LOC108262265,LOC108261610,LOC108261705,LOC108261932,LOC108261384,LOC108279477,LOC108261423,LOC108262337,LOC108261515,LOC108261554 other upstream 736240 1415905 ~ 1441145 (-)
G275420 NA other upstream 786194 1465859 ~ 1577516 (-)
LOC117599486 LOC108279477 other upstream 908105 1587770 ~ 1627263 (-)

Expression


Co-expression Network