LOC117599466 (LOC108262260,LOC108279495,LOC108279491)


Basic Information

Item Value
gene id LOC117599466
gene name LOC108262260,LOC108279495,LOC108279491
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 560707 ~ 629004 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU326089
CTGGAGACTTAAACACTCGTGGATGCTCCTAGAAGCACGTCGGTATCAGCGTCTCCATCTGCTTCAGTGCTTTTGGGCAGTTCAGTGTCTCTGAATTGCAGCAGTGATGCAAACCCAGCAGTGCTGATCTACACCTGGTACAGAGAGAACGGAGAGCAGATAGGAACCGGAAAACATCTCACCATCAACACGACTGATTCTACACAGAGTGGTTTATACTACTGTAGAGCTCAAAACCAGCTCGGAGATCACAGCTCTTCTGTGTACctggatgttcagtatgctCCTCGGGTCTCTCCCTTCTCCATCTGTAACAGCGCTCAGGATTTGATCATGTGTTTCTGTGAAGTTCGTGGAAATCCATCTCCTAAACTGGAGTGGCGTCTCTCCGGGCAAACTGTCTCTCCCTCTGAGGCGACATCTATCCGAGAGGAGTCTGTACATAACGTGGGTTTAATAAGCTTTATTACCATCCGTGAATCATTTATAGACACGCCCACTCTGCAGTGTGTTGGCTCCAACAACCTGGGTGTTGACACACACCTGTTTAATATCATTTCAGatcacagacacactgcagtactTTATCTggttctatctctctctgtggttctccttctgtgtgttggtgttattggATTTCTCATCTACAAATTAAAGCAATTGTCCAGGAAAATGAAAGTTCTACAGACAGGAGATACTTACgcttctctccagctctctgctGTACAGAACTCTGATTATGAAACTCTGCAGAC
>XM_034313106.1
ccatcttttcacactgaggacagTTTCTTCTCCAGGTGATCTTTCCTGAGCAGAGAAATGAAATCAGTGGAGAAACTCATCATCTTTTATTCTCTATTTCAAGgtgTTTTGTGTAGAGAATTCTCCATCAGTCTACCACAGAGTGTAGAAGCTCTGAGAAGACTCTGTGTTCTCATACCCTGCAGGTTTGAGATTGAAGAACAATTTGATGCAGACCTCCAGACAGATCTTACAGGAATCTGGTTTAAAGATGGCACTAACCATAACTATAACCAAGTCTTTAACTCTAAAGTAACTAAAGAGAACAAGATTGAAGGGGAAATTATAGGAGACCTCCACATGAAGAACTGCACCACCGTCTTCTACAACATCAGACAGAGTGACAGTGGAGAATATTACTTTAGAATAGAAACTTcaggaaaactgaaaaacacttATAGATCTTCATCAGTAGATATAAGAGTGCGAGaCTCTCCAATCAGCCCCTCAATAACACTGTATAAGGAGGATCAGGGGAAGGTGGAGGACCAAAATGAGGTGGTGGAGGGAACTTCAGTGAGTCTCATTTGCtctgctccagctcctccatGTCCCTCTAACCTCCCCACTTTTACATGGAACTTCCTGCCTGAGGAGAGAAGACAGGAGCAGAACCACAACACCAGCTTCAGCTCCTCTCAGCTGAACTTCAGCACTACTCACCTGCATCATGGAGTCAATTTCACCTGCACTGCCACCTACCAGCTCCAGAACAAGAACAAATCAGCACAGAGCTCTTTTACACTACATGTTCTGTATGCTCCTAGAAGCACGTCGGTATCAGCGTCTCCATCTGCTTCAGTGCTTTTGGGCAGTTCAGTGTCTCTGAATTGCAGCAGTGATGCAAACCCAGCAGTGCTGATCTACACCTGGTACAGAGAGAACGGAGAGCAGATAGGAACCGGAAAACATCTCACCATCAACACGACTGATTCTACACAGAGTGGTTTATACTACTGTAGAGCTCAAAACCAGCTCGGAGATCACAGCTCTTCTGTGTACctggatgttcagtATGCTCCTAGAAACACGTCAGTATCAGCGTCTCCATCTGCTTCAGTGCTTTTGGGCAGTTCAGTGTCTCTGAATTGCAGCAGTGATGCAAACCCAGCAGTGCTGAACTACACCTGGTACAGAGAGAACGGAGGGCAGATAGGAACCGGAAACCATCTCACCATCAACACGACTGATTCTACACAGAGTGGTTTATACTACTGTAGAGCTCAAAACCAGCTCGGAGATCACAACTCATCTGTGTACctggatgttcagtATGCTCCTAGAAGCACGTCAGTATCAGCGTCTCCATCTGCTTCAGTGCTTTTGGGCAGTTCAGTGTCTCTGAGTTGCAGCAGTGATGCAAACCCAGCAGTGCTGATCTACACCTGGTACAGAGAGAACGGAGAGCAGATAGGGACCGGAAACCATCTCACCATCAACACGACTGATTCTACACAGAGTGGTTTATACTACTGTAGAGCTCAAAACCAGCTCGGAGATCACAACTCATCTGTGTACctggatgttcagtatgctCCTCAGCTCTCTCCCTCCTCCAGCTGTAACAGCACTCAGGATTTGATCGTGTGTTCCTGTGAGTTTCGTGGAAATCCGTCTCCTAAGCTAGAGTGGCTTCTCTCTGGTCAAACCCCTGTCTCCCCATCGGAGGTCATATCCATCTGGGAGGAGTCAGCGAGTAACACAACCTTACGAAGCTTTATCTCCATCCGGCAATCAGTTAAGAACATGTCCACTCTGCAGTGTGTTGTCTTCAATAAGCTGGGCATCACCTCTCAGGTCTTCTCCTTTACGGACAAGGCTCAGTGCTCTGCTGGAGgttCAGGTGTGGATATTTCCTCTGTGCTGATTGGTGCAGCTGCTGGAGCTTCAGTAATGATGATGTTGTGTGGTATATTcctgtgtgtaagGAAAGCGACTCCCTCCCAGTCTGGACGAGGAGACACAGCAGGACTCGACACGGCTGTTTGTCAGGAGGAAAATGAAGAGTCTGTGTACGAGAACAAAATGGTTTTATCAGAGTCGCTTCATTACTCCACTGTCGTGTTTCCAAATGGAGCAGGAAGTGAAATCAGAGGCCTTTCCAAGCTCACTGCTGACTATGCCACCGTCCACCACAGCTCCGGACACCACACCGAGGGAGGAATTACAGAAACAGCCATCAAGGAAGTCCAGGGAGAAAACGGGATGAATATGGACGGTGAAAAGATGCAAGAAGAGGAGGTAACTTACGGAAACATCACACGCCAGCCAATGATGGAGAAAACTCAGTTGGAGGTggttgatgatgataataaagaTGAGGacaattatgatgatgatgaaattaaatatattaaagaaagaaaagaggataaagaaagagataaagagcagCACAAACACTCAGAGGAAGCTGAAGGTCTTTATGCACAAGTTAAACCTAATAAATGTGAAcagaaagtgtgaaaataatCTATAAAATCGTCCAGTGTTTAAAAATCTGCTCAGttattcaagctacaaagtggtgAAGAGTTTCAAACAGTATTTGTGAGCGCTAATACCACATGTTTCATCTTGTGATAATATTGCTTTGTTACATTTGGCCTGCTTCAATTTCACAAAGATGGCACATTAATGTGATAATCACAAATAAGGCTATGCATCACTCTCATCCTCAATATATTCACTAATTCACAGTATTCAGAGTTAAGTGCACTGAATTTACACACAtcggtattcagacctcagaagttacgtgagagttacACATGCGGGGCGGAGTTTGTAGAAAATggaggtgtgtctcagttacacttGATTCTGAACATTAATATgacagtattaattaattaattaataatatacttTGTTTAAAGTTTGTGAGAGAAAATCGGAGGGGACgcgtcttaatcagagacattgttTATCTTGAGGAGTGaatattttatggataaaatgatgaatgaagttaaagtttctctgtaaccgTAGCTGATGAGTGCTAGGTgagattatccttcacaccatGGACATGTTTCCTTTACAGCAGAGCTcatcgaattaacacaaacagtgtctgtatttattatttttcaacaaatcATATATTAGGTGTGATAAAATCAcctacatcccacacacacattacaatgtCATACTCTcatcatttataatgcattgctttagaaaatgataaaaaaaaagcaccaagaAAAATTCAGATAGAGCTGAAGGCCTTTATGCACAAGTTAAACTTCATAAACCAGGAGGATTTAACTGTGGTCACACTTTTTTCACGtggttaaaaaacacacacttgcagtttCAAAACTAGTCAGAGGGTCagactaaatataaaattaaagagcTGTTAGATTGAATATTTCTGTCACATGCTGTTTTAGGCTTTAGTGAAGCTGGTGCTACTGTAGAAAATGTCTGCTTTACTGCATATGTACTGAAATAATACGTAAAgcaaaaagctttaaaagtgaaaaataggAACAAACGCAATCAACATTGTGCAGCGCAACAAAATTACAGCATTTCTGAAACGAACAGCTCAAACATTGGTTATTTactcaagaaaataaatatgaagatgaGTTATgagtgtttttgcttttaattttacatttctgttttatgatttgtaaatatttcacattagaGAGTAACAATATGATATtgcatgtttatatgtttatgataCTTGcacaataatttttaaaagtctacatgtgtttattaaataagatctaaatcccgtcaaaattaataaattaataaatatcctTATTATCCTAATTATCCTTATATTTTGAAAGTCTTTCATCATacttatgtattattttattatttctttagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU326089 False 758 TUCP 0.46 6 609003 611951
XM_034313106.1 True 3910 mRNA 0.41 11 560707 629004

Neighbor

gene id symbol gene type direction distance location
LOC117599468 LOC108262260 coding downstream 85492 422513 ~ 475215 (-)
LOC117599422 LOC108279481,LOC108262260,LOC108279495 coding downstream 166454 376457 ~ 394253 (-)
cmah LOC108279485 coding downstream 395966 131691 ~ 164741 (-)
zdhhc17 zdhhc17,LOC102798393 coding downstream 452870 89473 ~ 107837 (-)
osbpl8 osbpl8,LOC107555879 coding downstream 510670 14021 ~ 50037 (-)
LOC117595727 LOC108262260 coding upstream 34721 663725 ~ 683075 (-)
LOC113543469 LOC108279491,LOC108262260 coding upstream 57032 686036 ~ 694483 (-)
LOC117599425 LOC108261705,LOC108261555,LOC108261423,LOC108261687,LOC108279477,LOC108261384,LOC108262265 coding upstream 276243 905247 ~ 906730 (-)
LOC117599426 LOC108262466,LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108261400 coding upstream 278226 907230 ~ 907847 (-)
LOC117599470 LOC107667668 coding upstream 546306 1175310 ~ 1177234 (-)
LOC117599521 NA non-coding downstream 27089 532826 ~ 533618 (-)
LOC117599492 NA non-coding downstream 29967 530099 ~ 530740 (-)
G275126 NA non-coding downstream 71785 487792 ~ 488922 (-)
G275141 NA non-coding downstream 112400 440793 ~ 448307 (-)
G275049 NA non-coding downstream 213258 347214 ~ 347449 (-)
G275167 cpsf6,LOC108279496,LOC107729149,LOC107555887,LOC106576649,LOC106593552 non-coding upstream 74327 703331 ~ 704306 (-)
G275168 NA non-coding upstream 74766 703770 ~ 705100 (-)
G275169 NA non-coding upstream 79327 708331 ~ 718266 (-)
G275170 NA non-coding upstream 89441 718445 ~ 719883 (-)
G275178 NA non-coding upstream 117446 746450 ~ 750995 (-)
LOC113531866 LOC108279481,LOC108262260,LOC108279491 other downstream 3020 403961 ~ 557687 (-)
G275152 LOC108261384,LOC108261611,LOC108279477,LOC108262118,LOC108261705,LOC108262466 other downstream 21409 536446 ~ 539298 (-)
LOC113532194 far1,LOC108279482,LOC107590516,LOC103366393 other downstream 35682 514984 ~ 525025 (-)
LOC113531599 LOC108262260,LOC108279491,LOC108279481 other downstream 191670 354974 ~ 369037 (-)
LOC113535352 LOC107729140 other downstream 273655 281434 ~ 287052 (-)
LOC117599510 NA other upstream 60 629064 ~ 631387 (-)
LOC117599428 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other upstream 634745 1263749 ~ 1297899 (-)
LOC117599495 NA other upstream 653450 1282454 ~ 1282934 (-)
LOC117599432 LOC108262265,LOC108261610,LOC108261705,LOC108261932,LOC108261384,LOC108279477,LOC108261423,LOC108262337,LOC108261515,LOC108261554 other upstream 786901 1415905 ~ 1441145 (-)
G275420 NA other upstream 836855 1465859 ~ 1577516 (-)

Expression


Co-expression Network