G275167 (cpsf6,LOC108279496,LOC107729149,LOC107555887,LOC106576649,LOC106593552)


Basic Information

Item Value
gene id G275167
gene name cpsf6,LOC108279496,LOC107729149,LOC107555887,LOC106576649,LOC106593552
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 703331 ~ 704306 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU326100
tgtgtctcttacccaggtgaggtgtgtgtgtctcttacccaggtgaggtgtgtgtgtgtgtctcttacccaggtgaggtgtgtgtgtgtgtgtctcttacccaggtgaggtgtgtgtgtgtgtgtctcttacccaggtgaggtgtgtgtgtgtgtatcttacCCAGGTGaggttatgtgtgtgtcttacccAGGTGAGGTTGCCGATGTACAGAGCGATGCGTTTGCCCGTGTAGGTGTAAACGACGTTGGGCGGAGCTCCTTTGTTCCCCTCGGTGCCTCCAGGTGCAGGCAGGTTGTCCAGGTAATCTCTGTCCTCAGGAGCATCTCCGTTATTGGCCGAGGGggagatgacatcatcatacaGGTCGATCTGCTCGTGAACGGGATAATCTgtttc
>TU326102
tgtgtgtgtgtcttacccagGTGAGGTTGCCGATGTACAGAGCGATGCGTTTGCCCGTGTAGGTGTAAACGACGTTGGGCGGAGCTCCTTTGTTCCCCTCGGTGCCTCCAGGTGCAGGCAGGTTGTCCAGGTAATCTCTGTCCTCAGGAGCATCTCCGTTATTGGCCGAGGGggagatgacatcatcatacaGGTCGATCTGCTCGTGAACGGGATAATCTgtttc

Function

symbol description
cpsf6 Predicted to enable mRNA binding activity. Predicted to be involved in mRNA alternative polyadenylation; positive regulation of RNA export from nucleus; and protein-containing complex assembly. Predicted to act upstream of or within mRNA processing. Located in paraspeckles. Is expressed in several structures, including blastomere; central nervous system; digestive system; eye; and yolk. Orthologous to human CPSF6 (cleavage and polyadenylation specific factor 6).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU326100 True 399 lncRNA 0.54 2 703331 704000
TU326102 False 226 lncRNA 0.55 2 703331 704306

Neighbor

gene id symbol gene type direction distance location
LOC113543469 LOC108279491,LOC108262260 coding downstream 8848 686036 ~ 694483 (-)
LOC117595727 LOC108262260 coding downstream 20256 663725 ~ 683075 (-)
LOC117599469 LOC108262260 coding downstream 133320 481574 ~ 570011 (-)
LOC117599468 LOC108262260 coding downstream 228116 422513 ~ 475215 (-)
LOC117599422 LOC108279481,LOC108262260,LOC108279495 coding downstream 309078 376457 ~ 394253 (-)
LOC117599425 LOC108261705,LOC108261555,LOC108261423,LOC108261687,LOC108279477,LOC108261384,LOC108262265 coding upstream 200941 905247 ~ 906730 (-)
LOC117599426 LOC108262466,LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108261400 coding upstream 202924 907230 ~ 907847 (-)
LOC117599470 LOC107667668 coding upstream 471004 1175310 ~ 1177234 (-)
LOC117599427 LOC108261400,LOC108261611,LOC108262466 coding upstream 537832 1242138 ~ 1255186 (-)
LOC117599430 LOC108279477,LOC108261384,LOC108261932 coding upstream 661805 1366111 ~ 1376319 (-)
G275134 NA non-coding downstream 23666 382925 ~ 679665 (-)
LOC117599521 NA non-coding downstream 169713 532826 ~ 533618 (-)
LOC117599492 NA non-coding downstream 172591 530099 ~ 530740 (-)
G275126 NA non-coding downstream 214409 487792 ~ 488922 (-)
G275141 NA non-coding downstream 255024 440793 ~ 448307 (-)
G275169 NA non-coding upstream 4025 708331 ~ 718266 (-)
G275170 NA non-coding upstream 14139 718445 ~ 719883 (-)
G275178 NA non-coding upstream 42144 746450 ~ 750995 (-)
G275202 NA non-coding upstream 52094 756400 ~ 782210 (-)
G275203 NA non-coding upstream 54636 758942 ~ 784853 (-)
LOC117599510 NA other downstream 71944 629064 ~ 631387 (-)
LOC117599466 LOC108262260,LOC108279495,LOC108279491 other downstream 74327 560707 ~ 629004 (-)
LOC117599533 NA other downstream 102302 597414 ~ 601029 (-)
LOC117599529 NA other downstream 116513 583198 ~ 586818 (-)
LOC113531866 LOC108279481,LOC108262260,LOC108279491 other downstream 145644 403961 ~ 557687 (-)
LOC117599428 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other upstream 559443 1263749 ~ 1297899 (-)
LOC117599495 NA other upstream 578148 1282454 ~ 1282934 (-)
LOC117599432 LOC108262265,LOC108261610,LOC108261705,LOC108261932,LOC108261384,LOC108279477,LOC108261423,LOC108262337,LOC108261515,LOC108261554 other upstream 711599 1415905 ~ 1441145 (-)
G275420 NA other upstream 761553 1465859 ~ 1577516 (-)
LOC117599486 LOC108279477 other upstream 883464 1587770 ~ 1627263 (-)

Expression


Co-expression Network