G275202


Basic Information

Item Value
gene id G275202
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 756400 ~ 782210 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU326147
GGaaagtgcacatgcacatgcacacacacacacacatttgcacctgcactaaatcagaagctttaatagatgcttatcagcagaattctgtctctacaccacatgtactctaactgcacatttcctctcacacacatttagcttatttttatttatttgtcataatatatatacatatacaaatattatattatacattatacaccgatc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU326147 True 210 lncRNA 0.33 2 756400 782210

Neighbor

gene id symbol gene type direction distance location
LOC113543469 LOC108279491,LOC108262260 coding downstream 61917 686036 ~ 694483 (-)
LOC117595727 LOC108262260 coding downstream 73325 663725 ~ 683075 (-)
LOC117599469 LOC108262260 coding downstream 186389 481574 ~ 570011 (-)
LOC117599468 LOC108262260 coding downstream 281185 422513 ~ 475215 (-)
LOC117599422 LOC108279481,LOC108262260,LOC108279495 coding downstream 362147 376457 ~ 394253 (-)
LOC117599425 LOC108261705,LOC108261555,LOC108261423,LOC108261687,LOC108279477,LOC108261384,LOC108262265 coding upstream 123037 905247 ~ 906730 (-)
LOC117599426 LOC108262466,LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108261400 coding upstream 125020 907230 ~ 907847 (-)
LOC117599470 LOC107667668 coding upstream 393100 1175310 ~ 1177234 (-)
LOC117599427 LOC108261400,LOC108261611,LOC108262466 coding upstream 459928 1242138 ~ 1255186 (-)
LOC117599430 LOC108279477,LOC108261384,LOC108261932 coding upstream 583901 1366111 ~ 1376319 (-)
G275178 NA non-coding downstream 5405 746450 ~ 750995 (-)
G275170 NA non-coding downstream 36517 718445 ~ 719883 (-)
G275169 NA non-coding downstream 38134 708331 ~ 718266 (-)
G275168 NA non-coding downstream 51300 703770 ~ 705100 (-)
G275167 cpsf6,LOC108279496,LOC107729149,LOC107555887,LOC106576649,LOC106593552 non-coding downstream 52094 703331 ~ 704306 (-)
LOC117599493 NA non-coding upstream 58418 840628 ~ 841268 (-)
LOC117599512 LOC108261384,LOC108279477,LOC108261687,LOC108261932 non-coding upstream 63723 845933 ~ 846981 (-)
LOC117599484 NA non-coding upstream 87780 869990 ~ 870475 (-)
LOC117599491 NA non-coding upstream 94828 877038 ~ 878254 (-)
LOC117599477 LOC108279477 non-coding upstream 118563 900773 ~ 901840 (-)
LOC117599510 NA other downstream 125013 629064 ~ 631387 (-)
LOC117599466 LOC108262260,LOC108279495,LOC108279491 other downstream 127396 560707 ~ 629004 (-)
LOC117599533 NA other downstream 155371 597414 ~ 601029 (-)
LOC117599529 NA other downstream 169582 583198 ~ 586818 (-)
G275152 LOC108261384,LOC108261611,LOC108279477,LOC108262118,LOC108261705,LOC108262466 other downstream 217102 536446 ~ 539298 (-)
LOC117599428 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other upstream 481539 1263749 ~ 1297899 (-)
LOC117599495 NA other upstream 500244 1282454 ~ 1282934 (-)
LOC117599432 LOC108262265,LOC108261610,LOC108261705,LOC108261932,LOC108261384,LOC108279477,LOC108261423,LOC108262337,LOC108261515,LOC108261554 other upstream 633695 1415905 ~ 1441145 (-)
G275420 NA other upstream 683649 1465859 ~ 1577516 (-)
LOC117599486 LOC108279477 other upstream 805560 1587770 ~ 1627263 (-)

Expression


Co-expression Network