G275382 (LOC108261611,LOC108261401,LOC108444127,LOC108444122)


Basic Information

Item Value
gene id G275382
gene name LOC108261611,LOC108261401,LOC108444127,LOC108444122
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 1097145 ~ 1313535 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU326381
tcagtgtcgactctgatcctctacagtccacatcatccatccagattggtcctgatcctcGTCCAAAGTGAGCTTTATACCGCACATTCACAGGCTCCCCACAGTGCAGCTCtttacacaccactgcagcttctctcatatcccagtaatcatcacacactgttccccactgtccatcatgaagaacctccactcttccagcacagcgacttccattcaccaacctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU326381 True 227 lncRNA 0.50 2 1097145 1313535

Neighbor

gene id symbol gene type direction distance location
LOC117599426 LOC108262466,LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108261400 coding downstream 189298 907230 ~ 907847 (-)
LOC117599425 LOC108261705,LOC108261555,LOC108261423,LOC108261687,LOC108279477,LOC108261384,LOC108262265 coding downstream 190415 905247 ~ 906730 (-)
LOC113543469 LOC108279491,LOC108262260 coding downstream 402662 686036 ~ 694483 (-)
LOC117595727 LOC108262260 coding downstream 414070 663725 ~ 683075 (-)
LOC117599469 LOC108262260 coding downstream 527134 481574 ~ 570011 (-)
LOC117599430 LOC108279477,LOC108261384,LOC108261932 coding upstream 52576 1366111 ~ 1376319 (-)
LOC117599496 NA coding upstream 74661 1388196 ~ 1388678 (-)
LOC117599431 LOC108261705,LOC108261423,LOC108261555,LOC108279477,LOC108261687,LOC108261384,LOC108262265 coding upstream 78365 1391900 ~ 1395944 (-)
LOC117599489 NA coding upstream 97596 1411131 ~ 1411615 (-)
LOC117599435 NA coding upstream 1058089 2371624 ~ 2373304 (-)
LOC117599477 LOC108279477 non-coding downstream 195305 900773 ~ 901840 (-)
LOC117599491 NA non-coding downstream 218891 877038 ~ 878254 (-)
LOC117599484 NA non-coding downstream 226670 869990 ~ 870475 (-)
LOC117599512 LOC108261384,LOC108279477,LOC108261687,LOC108261932 non-coding downstream 250164 845933 ~ 846981 (-)
LOC117599493 NA non-coding downstream 255877 840628 ~ 841268 (-)
G275408 NA non-coding upstream 73017 1386552 ~ 1433883 (-)
G275369 LOC108261400,LOC108279477,LOC108261423,LOC108262466,LOC108261705,LOC108261384,LOC108261555,LOC108261687,LOC108261611 non-coding upstream 82904 1396439 ~ 1462056 (-)
G275412 NA non-coding upstream 99857 1413392 ~ 1454206 (-)
G275416 LOC108279477,LOC108261384,LOC108261705,LOC108261687,LOC108261555,LOC108262265,LOC108261423,LOC108444129,LOC108412318 non-coding upstream 127704 1441239 ~ 1458199 (-)
LOC117599503 NA non-coding upstream 135547 1449082 ~ 1451712 (-)
LOC117599510 NA other downstream 465758 629064 ~ 631387 (-)
LOC117599466 LOC108262260,LOC108279495,LOC108279491 other downstream 468141 560707 ~ 629004 (-)
LOC117599533 NA other downstream 496116 597414 ~ 601029 (-)
LOC117599529 NA other downstream 510327 583198 ~ 586818 (-)
G275152 LOC108261384,LOC108261611,LOC108279477,LOC108262118,LOC108261705,LOC108262466 other downstream 557847 536446 ~ 539298 (-)
LOC117599432 LOC108262265,LOC108261610,LOC108261705,LOC108261932,LOC108261384,LOC108279477,LOC108261423,LOC108262337,LOC108261515,LOC108261554 other upstream 102370 1415905 ~ 1441145 (-)
G275420 NA other upstream 152324 1465859 ~ 1577516 (-)
LOC117599486 LOC108279477 other upstream 274235 1587770 ~ 1627263 (-)
G275475 LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other upstream 724700 2038235 ~ 2040062 (-)
G275480 LOC108261384,LOC108262358,LOC108261705,LOC108261423,LOC108279477,LOC108261555,LOC108261687,LOC108412318,LOC108415949 other upstream 747952 2061487 ~ 2062120 (-)

Expression


Co-expression Network