LOC117599428 (LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261555,LOC108261687,LOC108262265,LOC108261610)


Basic Information

Item Value
gene id LOC117599428
gene name LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261555,LOC108261687,LOC108262265,LOC108261610
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 1263749 ~ 1297899 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU326402
cagagtttaaagagatccGACTCACGGAGGGCTGTAAAGGGAATCTGGAAGTGTTCTACAATGGAACCTggggtaatgtgtgtcacaATCAGATGGAGCTGGAGGTAGAAACAGCAAATATGGTGTGTCAagagctgaactgtggaagACGCAAGAGTTTGACCTCAGCCAGAGGGAGAGTCGAATCTGCTCCTAATTGGCTGGATCATGTGAAATGTAGGAAACACGACTCTAATCTGTTAAAGTGTCCATCTTCACCCTGGGGACAGAACAACTGTGATAGTCGTAGTGATGAGGTGGTTCATATTACCTGCACAGAAGATGGAACGTCTCTACGTACTCATGGGACCTGCTCTAAATTTCCTCTTCAGAAATATTGCTCAAagcactggtctctcaggctgagtggaggaaagggaagctgctctgggaggttggaggtgtatcataacgctacgtggggctccgtttgtg
>XM_034312968.1
ATGTCAGgCCCCAGCTCCATCAGGCTGGTTGGTTCTGGGGGAGACTGTGCAGGAAGGCTGGAGGTTTTCCACAGCGGCTCGtgggggacagtgtgtgatgactcgtgggatattgaggatgcgcaggtggtgtgcagacagctgcagtgtggagaggccctcagtacccacataccagcctggtttggtcctggaactgggtccatatggctgaatgaggtggagtgtgaggggaacgagacgtccctgtggaactgcagatttcagctgtgtgaagagGGAGAATGTGGACACCAGGAGGACGTAGGAGTCGtgtgctcagagtttaaagagatccGACTCACGGAGGGCTGTAAAGGGAATCTGGAAGTGTTCTACAATGGAACCTggggtaatgtgtgtcacaATCAGATGGAGCTGGAGGTAGAAACAGCAAATATGGTGTGTCAagagctgaactgtggaagACGCAAGAGTTTGACCTCAGCCAGAGGGAGAGTCGAATCTGCTCCTAATTGGCTGGATCATGTGAAATGTAGGAAACACGACTCTAATCTGTTAAAGTGTCCATCTTCACCCTGGGGACAGAACAACTGTGATAGTCGTAGTGATGAGGTGGTTCATATTACCTGCACAGAAGATGGAACGTCTCTACGTACTCATGGGACCTGCTCTAAATTTCCTCTTCAGAAATATTGCTCAAagcactggtctctcaggctgagtggaggaaagggaagctgctctgggaggttggaggtgtaTCATAACGCTACGTGGGGGCTCctttgtgatgatcagtggaacatcaggaacgctcaggtggtgtgcagacagctgggctgtgggtcgGCGCTGAGTGCTGATAGGAATGTTTCGTTTCGGTGCTGGTGAAGGGActatctggct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU326402 False 474 TUCP 0.48 3 1294140 1295377
XM_034312968.1 True 909 mRNA 0.52 5 1263749 1297899

Neighbor

gene id symbol gene type direction distance location
LOC117599427 LOC108261400,LOC108261611,LOC108262466 coding downstream 8563 1242138 ~ 1255186 (-)
LOC117599470 LOC107667668 coding downstream 86515 1175310 ~ 1177234 (-)
LOC117599426 LOC108262466,LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108261400 coding downstream 355902 907230 ~ 907847 (-)
LOC117599425 LOC108261705,LOC108261555,LOC108261423,LOC108261687,LOC108279477,LOC108261384,LOC108262265 coding downstream 357019 905247 ~ 906730 (-)
LOC113543469 LOC108279491,LOC108262260 coding downstream 569266 686036 ~ 694483 (-)
LOC117599430 LOC108279477,LOC108261384,LOC108261932 coding upstream 68212 1366111 ~ 1376319 (-)
LOC117599496 NA coding upstream 90297 1388196 ~ 1388678 (-)
LOC117599431 LOC108261705,LOC108261423,LOC108261555,LOC108279477,LOC108261687,LOC108261384,LOC108262265 coding upstream 94001 1391900 ~ 1395944 (-)
LOC117599489 NA coding upstream 113232 1411131 ~ 1411615 (-)
LOC117599435 NA coding upstream 1073725 2371624 ~ 2373304 (-)
LOC117599476 LOC108279477 non-coding downstream 1039 1261642 ~ 1262710 (-)
LOC117599532 NA non-coding downstream 21845 1241367 ~ 1241904 (-)
G275393 NA non-coding downstream 114985 1145605 ~ 1148764 (-)
LOC117599494 NA non-coding downstream 131180 1132088 ~ 1132569 (-)
LOC117599477 LOC108279477 non-coding downstream 361909 900773 ~ 901840 (-)
G275408 NA non-coding upstream 88653 1386552 ~ 1433883 (-)
G275369 LOC108261400,LOC108279477,LOC108261423,LOC108262466,LOC108261705,LOC108261384,LOC108261555,LOC108261687,LOC108261611 non-coding upstream 98540 1396439 ~ 1462056 (-)
G275412 NA non-coding upstream 115493 1413392 ~ 1454206 (-)
G275416 LOC108279477,LOC108261384,LOC108261705,LOC108261687,LOC108261555,LOC108262265,LOC108261423,LOC108444129,LOC108412318 non-coding upstream 143340 1441239 ~ 1458199 (-)
LOC117599503 NA non-coding upstream 151183 1449082 ~ 1451712 (-)
LOC117599510 NA other downstream 632362 629064 ~ 631387 (-)
LOC117599466 LOC108262260,LOC108279495,LOC108279491 other downstream 634745 560707 ~ 629004 (-)
LOC117599533 NA other downstream 662720 597414 ~ 601029 (-)
LOC117599529 NA other downstream 676931 583198 ~ 586818 (-)
LOC113531866 LOC108279481,LOC108262260,LOC108279491 other downstream 706062 403961 ~ 557687 (-)
LOC117599432 LOC108262265,LOC108261610,LOC108261705,LOC108261932,LOC108261384,LOC108279477,LOC108261423,LOC108262337,LOC108261515,LOC108261554 other upstream 118006 1415905 ~ 1441145 (-)
G275420 NA other upstream 167960 1465859 ~ 1577516 (-)
LOC117599486 LOC108279477 other upstream 289871 1587770 ~ 1627263 (-)
G275475 LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other upstream 740336 2038235 ~ 2040062 (-)
G275480 LOC108261384,LOC108262358,LOC108261705,LOC108261423,LOC108279477,LOC108261555,LOC108261687,LOC108412318,LOC108415949 other upstream 763588 2061487 ~ 2062120 (-)

Expression


Co-expression Network