G275408


Basic Information

Item Value
gene id G275408
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 1386552 ~ 1433883 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU326407
acagtccagaagattatgatgatgtcatcactgaggaacaggatgtaggagagacagaagaatatgatgatgtggaggagaaatctcagaaagacagggaccatgtgactgagacacgccaccaaaggccttttctcaggaaattacacttttttaaacgcaaaaaatgattttattatacttccaaaaatgtcatgttttctgaactgtgttcattttccccctagttattagcaaatagagtagggagagttaaatcacctttcatattacctaatgcaatgtctccagcttttcttttacaacactttttatttcttaaaacaacacttgtttattaattttttttaaaaaagacacaatTACCTTTATGTTCAATGCTATTCTTTTAGCTATAAACCATAGTTGAACTGGATTAGAGAATTCTGTTCTGCCCATTATCTGGTCATGGTGTATAGCCGCCACCTAGTGGCCATtttcaatattgcagttttgttattcttccatACGCTGTGTTGATTTAGTTCGGTAACAGTCAACGTGCAGCATCGGCTTCAATTCAGCTCACAAACAGTCGTTGCCTTGGAGAAAGATATGCCTGTAAGTTTGCTGACTATTTGTAAGAGATCTATAAGAGTGTTATGTGGTAACATAATATTACTTCttgaaagtgaagtttgtgatcgatgtaatatgataatgtgaga
>TU326409
cagggaccatgtgactgagacacgccaccaaaggccttttctcaggaaattacacttttttaaatgcaaaaaatgattttattttacttccaaaaatgtcacattttctgaactgtgttcattttccccctagttattagcaaatagagtagggagagttaaatcacctttcatattacctaatgcaatgtctccaccttttcttttacaacactttttatttcttaaaacatcacttgtttattaattttttaaaaaagacacaaattacCTTTATGTTCAATGCTATTCTTTTAGCTATAAACCATAGTTGAACTGGATTAGAGAATTCTGTTCTGCCCATTATCTGGTCATGGTGTATAGCCGCCACCTAGTGGCCATtttcaatattgcagttttgttattcttcca

Function

GO: NA

KEGG:

id description
ko05164 Influenza A
ko05162 Measles

RNA

RNA id representative length rna type GC content exon number start site end site
TU326407 True 707 lncRNA 0.36 3 1386552 1410588
TU326409 False 411 lncRNA 0.33 2 1409691 1433883

Neighbor

gene id symbol gene type direction distance location
LOC117599430 LOC108279477,LOC108261384,LOC108261932 coding downstream 10233 1366111 ~ 1376319 (-)
LOC117599427 LOC108261400,LOC108261611,LOC108262466 coding downstream 131366 1242138 ~ 1255186 (-)
LOC117599470 LOC107667668 coding downstream 209318 1175310 ~ 1177234 (-)
LOC117599426 LOC108262466,LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108261400 coding downstream 478705 907230 ~ 907847 (-)
LOC117599425 LOC108261705,LOC108261555,LOC108261423,LOC108261687,LOC108279477,LOC108261384,LOC108262265 coding downstream 479822 905247 ~ 906730 (-)
LOC117599435 NA coding upstream 937741 2371624 ~ 2373304 (-)
LOC117599527 NA coding upstream 946006 2379889 ~ 2381334 (-)
LOC117599436 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261610,LOC108261555,LOC108261687 coding upstream 978659 2412542 ~ 2415193 (-)
LOC117599531 NA coding upstream 994625 2428508 ~ 2428941 (-)
LOC117599505 NA coding upstream 1020369 2454252 ~ 2455081 (-)
G275382 LOC108261611,LOC108261401,LOC108444127,LOC108444122 non-coding downstream 73017 1097145 ~ 1313535 (-)
LOC117599498 NA non-coding downstream 92576 1292165 ~ 1293976 (-)
LOC117599476 LOC108279477 non-coding downstream 123842 1261642 ~ 1262710 (-)
LOC117599532 NA non-coding downstream 144648 1241367 ~ 1241904 (-)
G275393 NA non-coding downstream 237788 1145605 ~ 1148764 (-)
G275416 LOC108279477,LOC108261384,LOC108261705,LOC108261687,LOC108261555,LOC108262265,LOC108261423,LOC108444129,LOC108412318 non-coding upstream 7356 1441239 ~ 1458199 (-)
LOC117599503 NA non-coding upstream 15199 1449082 ~ 1451712 (-)
G275419 LOC108261384,LOC108261611,LOC108279477 non-coding upstream 26040 1459923 ~ 1573322 (-)
LOC117599633 NA non-coding upstream 62179 1496062 ~ 1496168 (-)
LOC117599485 NA non-coding upstream 155430 1589313 ~ 1589798 (-)
LOC117599428 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other downstream 88653 1263749 ~ 1297899 (-)
LOC117599495 NA other downstream 103618 1282454 ~ 1282934 (-)
LOC117599510 NA other downstream 755165 629064 ~ 631387 (-)
LOC117599466 LOC108262260,LOC108279495,LOC108279491 other downstream 757548 560707 ~ 629004 (-)
G275420 NA other upstream 31976 1465859 ~ 1577516 (-)
LOC117599486 LOC108279477 other upstream 153887 1587770 ~ 1627263 (-)
G275475 LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other upstream 604352 2038235 ~ 2040062 (-)
G275480 LOC108261384,LOC108262358,LOC108261705,LOC108261423,LOC108279477,LOC108261555,LOC108261687,LOC108412318,LOC108415949 other upstream 627604 2061487 ~ 2062120 (-)
G275481 LOC108261611,LOC108261400,LOC108261743,LOC108262649 other upstream 631791 2065674 ~ 2069129 (-)

Expression


Co-expression Network