G275412


Basic Information

Item Value
gene id G275412
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 1413392 ~ 1454206 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU326415
acaccgatcagccataacattatgaccactgacaggtgaagtgaataatattgattatctcattacaatagcacctgtcaagggttgagatatattaggcagcaagtgaccagtcggttctcgaagttgatgtgttggaaacaggaaaaatgggcaagcgtaaggattagagagactttgacaacggccaaattgtgatggctagatgactgggtcagagcatctttaaaacggcaggccttgtggggtgttccctgtatgcagtggttagtacctaccaaacgtggtccaaggaaggacaaccggtgaactagcgacagggtcatggacgcccaaggctcactgatgcgtgtggggagtgaaggctagtccctctggtctgatcccacagaagagctattgtagcacaaattgctgaaagttaaagctggctatgatagaaaggtgtcagaacacacagtgcatcgcagcttgctgcgtatggggctgtgtagccacagacctgtcagagtgcccatgctgacctctgtccactgccaaaagtgcctacaatggacaggtgagcatcagaactggaccatggagcaatggaagaagg

Function

GO:

id name namespace
GO:0061783 peptidoglycan muralytic activity molecular_function
GO:0003796 lysozyme activity molecular_function

KEGG:

id description
ko00730 Thiamine metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU326415 True 598 lncRNA 0.49 2 1413392 1454206

Neighbor

gene id symbol gene type direction distance location
LOC117599489 NA coding downstream 1777 1411131 ~ 1411615 (-)
LOC117599431 LOC108261705,LOC108261423,LOC108261555,LOC108279477,LOC108261687,LOC108261384,LOC108262265 coding downstream 17448 1391900 ~ 1395944 (-)
LOC117599496 NA coding downstream 24714 1388196 ~ 1388678 (-)
LOC117599430 LOC108279477,LOC108261384,LOC108261932 coding downstream 37073 1366111 ~ 1376319 (-)
LOC117599427 LOC108261400,LOC108261611,LOC108262466 coding downstream 158206 1242138 ~ 1255186 (-)
LOC117599435 NA coding upstream 917418 2371624 ~ 2373304 (-)
LOC117599527 NA coding upstream 925683 2379889 ~ 2381334 (-)
LOC117599436 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261610,LOC108261555,LOC108261687 coding upstream 958336 2412542 ~ 2415193 (-)
LOC117599531 NA coding upstream 974302 2428508 ~ 2428941 (-)
LOC117599505 NA coding upstream 1000046 2454252 ~ 2455081 (-)
G275382 LOC108261611,LOC108261401,LOC108444127,LOC108444122 non-coding downstream 99857 1097145 ~ 1313535 (-)
LOC117599498 NA non-coding downstream 119416 1292165 ~ 1293976 (-)
LOC117599476 LOC108279477 non-coding downstream 150682 1261642 ~ 1262710 (-)
LOC117599532 NA non-coding downstream 171488 1241367 ~ 1241904 (-)
G275393 NA non-coding downstream 264628 1145605 ~ 1148764 (-)
G275419 LOC108261384,LOC108261611,LOC108279477 non-coding upstream 5717 1459923 ~ 1573322 (-)
LOC117599633 NA non-coding upstream 41856 1496062 ~ 1496168 (-)
LOC117599485 NA non-coding upstream 135107 1589313 ~ 1589798 (-)
LOC117599525 LOC108261705,LOC108261555,LOC108261423,LOC108261687,LOC108279477,LOC108261384,LOC108262265 non-coding upstream 138948 1593154 ~ 1593964 (-)
LOC117599524 NA non-coding upstream 174817 1629023 ~ 1629581 (-)
LOC117599428 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other downstream 115493 1263749 ~ 1297899 (-)
LOC117599495 NA other downstream 130458 1282454 ~ 1282934 (-)
LOC117599510 NA other downstream 782005 629064 ~ 631387 (-)
LOC117599466 LOC108262260,LOC108279495,LOC108279491 other downstream 784388 560707 ~ 629004 (-)
G275420 NA other upstream 11653 1465859 ~ 1577516 (-)
LOC117599486 LOC108279477 other upstream 133564 1587770 ~ 1627263 (-)
G275475 LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other upstream 584029 2038235 ~ 2040062 (-)
G275480 LOC108261384,LOC108262358,LOC108261705,LOC108261423,LOC108279477,LOC108261555,LOC108261687,LOC108412318,LOC108415949 other upstream 607281 2061487 ~ 2062120 (-)
G275481 LOC108261611,LOC108261400,LOC108261743,LOC108262649 other upstream 611468 2065674 ~ 2069129 (-)

Expression


Co-expression Network