G275416 (LOC108279477,LOC108261384,LOC108261705,LOC108261687,LOC108261555,LOC108262265,LOC108261423,LOC108444129,LOC108412318)


Basic Information

Item Value
gene id G275416
gene name LOC108279477,LOC108261384,LOC108261705,LOC108261687,LOC108261555,LOC108262265,LOC108261423,LOC108444129,LOC108412318
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 1441239 ~ 1458199 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU326420
tgatgactcgtgggatattgaggatgcgcaggtggtgtgcagacagctgcagtgtggagaggccctcagtacccacataccagcctggtttggtcctggaactgggtccatatggctgaatgaggtggagtgtgaggggaacgagacgtccctgtggaactgcagatttcagctgtgtgaagagGGTGAATGTGGACACCAGGAGGACGTAGGAGTCGtgtgctcagagtttaaagagatccgactcacggagggctgtgaggggaatctggaagtgttctacaatggaacctggggtaatgtgtgtca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU326420 True 309 lncRNA 0.54 2 1441239 1458199

Neighbor

gene id symbol gene type direction distance location
LOC117599489 NA coding downstream 29624 1411131 ~ 1411615 (-)
LOC117599431 LOC108261705,LOC108261423,LOC108261555,LOC108279477,LOC108261687,LOC108261384,LOC108262265 coding downstream 45295 1391900 ~ 1395944 (-)
LOC117599496 NA coding downstream 52561 1388196 ~ 1388678 (-)
LOC117599430 LOC108279477,LOC108261384,LOC108261932 coding downstream 64920 1366111 ~ 1376319 (-)
LOC117599427 LOC108261400,LOC108261611,LOC108262466 coding downstream 186053 1242138 ~ 1255186 (-)
LOC117599435 NA coding upstream 913425 2371624 ~ 2373304 (-)
LOC117599527 NA coding upstream 921690 2379889 ~ 2381334 (-)
LOC117599436 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261610,LOC108261555,LOC108261687 coding upstream 954343 2412542 ~ 2415193 (-)
LOC117599531 NA coding upstream 970309 2428508 ~ 2428941 (-)
LOC117599505 NA coding upstream 996053 2454252 ~ 2455081 (-)
G275408 NA non-coding downstream 7356 1386552 ~ 1433883 (-)
G275382 LOC108261611,LOC108261401,LOC108444127,LOC108444122 non-coding downstream 127704 1097145 ~ 1313535 (-)
LOC117599498 NA non-coding downstream 147263 1292165 ~ 1293976 (-)
LOC117599476 LOC108279477 non-coding downstream 178529 1261642 ~ 1262710 (-)
LOC117599532 NA non-coding downstream 199335 1241367 ~ 1241904 (-)
G275419 LOC108261384,LOC108261611,LOC108279477 non-coding upstream 1724 1459923 ~ 1573322 (-)
LOC117599633 NA non-coding upstream 37863 1496062 ~ 1496168 (-)
LOC117599485 NA non-coding upstream 131114 1589313 ~ 1589798 (-)
LOC117599525 LOC108261705,LOC108261555,LOC108261423,LOC108261687,LOC108279477,LOC108261384,LOC108262265 non-coding upstream 134955 1593154 ~ 1593964 (-)
LOC117599524 NA non-coding upstream 170824 1629023 ~ 1629581 (-)
LOC117599432 LOC108262265,LOC108261610,LOC108261705,LOC108261932,LOC108261384,LOC108279477,LOC108261423,LOC108262337,LOC108261515,LOC108261554 other downstream 94 1415905 ~ 1441145 (-)
LOC117599428 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other downstream 143340 1263749 ~ 1297899 (-)
LOC117599495 NA other downstream 158305 1282454 ~ 1282934 (-)
LOC117599510 NA other downstream 809852 629064 ~ 631387 (-)
LOC117599466 LOC108262260,LOC108279495,LOC108279491 other downstream 812235 560707 ~ 629004 (-)
G275420 NA other upstream 7660 1465859 ~ 1577516 (-)
LOC117599486 LOC108279477 other upstream 129571 1587770 ~ 1627263 (-)
G275475 LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other upstream 580036 2038235 ~ 2040062 (-)
G275480 LOC108261384,LOC108262358,LOC108261705,LOC108261423,LOC108279477,LOC108261555,LOC108261687,LOC108412318,LOC108415949 other upstream 603288 2061487 ~ 2062120 (-)
G275481 LOC108261611,LOC108261400,LOC108261743,LOC108262649 other upstream 607475 2065674 ~ 2069129 (-)

Expression


Co-expression Network