LOC117599503


Basic Information

Item Value
gene id LOC117599503
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 1449082 ~ 1451712 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU326421
gagaattatgatgacgccattacagctgatcagaagtcagttatactgacagAGGACGTGTCCGAGAACTATGATGATGCAGTTACCACGGAAACAAagccaaacatcatcacagacagtccagaagattatgatgatgtcatcactgaggaacaggatgtaggagagacagaagaatatgatgatgtggaggagaaatCTCAGAAAGACAGGGACC
>XR_004579916.1
ttgtttattggtttgtgtgtagtgacattttttacatgtatacgatgtcattttgcattgtgtcatcaaatacacagtgtacaacCTGCCACTTCAGTAAACgttaaatctctttaaatatctgtgttttggtgtagaggatgaagcagagaattatgatgacgccattacagctgatcagaagtcagttatactgacagAGGACGTGTCCGAGAACTATGATGATGCAGTTACCACGGAAACAAagccaaacatcatcacagacagtccagaagattatgatgatgtcatcactgaggaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU326421 False 217 lncRNA 0.43 4 1449082 1451564
XR_004579916.1 True 301 lncRNA 0.38 3 1449530 1451712

Neighbor

gene id symbol gene type direction distance location
LOC117599489 NA coding downstream 37467 1411131 ~ 1411615 (-)
LOC117599431 LOC108261705,LOC108261423,LOC108261555,LOC108279477,LOC108261687,LOC108261384,LOC108262265 coding downstream 53138 1391900 ~ 1395944 (-)
LOC117599496 NA coding downstream 60404 1388196 ~ 1388678 (-)
LOC117599430 LOC108279477,LOC108261384,LOC108261932 coding downstream 72763 1366111 ~ 1376319 (-)
LOC117599427 LOC108261400,LOC108261611,LOC108262466 coding downstream 193896 1242138 ~ 1255186 (-)
LOC117599435 NA coding upstream 919912 2371624 ~ 2373304 (-)
LOC117599527 NA coding upstream 928177 2379889 ~ 2381334 (-)
LOC117599436 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261610,LOC108261555,LOC108261687 coding upstream 960830 2412542 ~ 2415193 (-)
LOC117599531 NA coding upstream 976796 2428508 ~ 2428941 (-)
LOC117599505 NA coding upstream 1002540 2454252 ~ 2455081 (-)
G275408 NA non-coding downstream 15199 1386552 ~ 1433883 (-)
LOC117599498 NA non-coding downstream 155106 1292165 ~ 1293976 (-)
LOC117599476 LOC108279477 non-coding downstream 186372 1261642 ~ 1262710 (-)
LOC117599532 NA non-coding downstream 207178 1241367 ~ 1241904 (-)
G275393 NA non-coding downstream 300318 1145605 ~ 1148764 (-)
G275419 LOC108261384,LOC108261611,LOC108279477 non-coding upstream 8211 1459923 ~ 1573322 (-)
LOC117599633 NA non-coding upstream 44350 1496062 ~ 1496168 (-)
LOC117599485 NA non-coding upstream 137601 1589313 ~ 1589798 (-)
LOC117599525 LOC108261705,LOC108261555,LOC108261423,LOC108261687,LOC108279477,LOC108261384,LOC108262265 non-coding upstream 141442 1593154 ~ 1593964 (-)
LOC117599524 NA non-coding upstream 177311 1629023 ~ 1629581 (-)
LOC117599432 LOC108262265,LOC108261610,LOC108261705,LOC108261932,LOC108261384,LOC108279477,LOC108261423,LOC108262337,LOC108261515,LOC108261554 other downstream 7937 1415905 ~ 1441145 (-)
LOC117599428 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other downstream 151183 1263749 ~ 1297899 (-)
LOC117599495 NA other downstream 166148 1282454 ~ 1282934 (-)
LOC117599510 NA other downstream 817695 629064 ~ 631387 (-)
LOC117599533 NA other downstream 848053 597414 ~ 601029 (-)
G275420 NA other upstream 14147 1465859 ~ 1577516 (-)
LOC117599486 LOC108279477 other upstream 136058 1587770 ~ 1627263 (-)
G275475 LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other upstream 586523 2038235 ~ 2040062 (-)
G275480 LOC108261384,LOC108262358,LOC108261705,LOC108261423,LOC108279477,LOC108261555,LOC108261687,LOC108412318,LOC108415949 other upstream 609775 2061487 ~ 2062120 (-)
G275481 LOC108261611,LOC108261400,LOC108261743,LOC108262649 other upstream 613962 2065674 ~ 2069129 (-)

Expression


Co-expression Network