LOC117599486 (LOC108279477)


Basic Information

Item Value
gene id LOC117599486
gene name LOC108279477
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 1587770 ~ 1627263 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU326444
CTGCTGGACCGATCCCTGATAACGTGGatgaggatgaagctgagaattatgatgacgccattacagctgatcagaagtcagttatactgacagaggacgtgtccgagaactatgatgatgcagttaccatggaaacaaacccaaacatcatcacagtagacagtccagaagattatgatgatgtcatcactgaggaacaggatgtaggagagacagaagaatatgatgatgtggaggagaaatctcagaaagacagggaccatgtgactgagacacgccaccaaaggccttttctcaggaaattacacttttttaaatgcaaaaaatgattttattttacttccaaaatgtcatgttttctgaactgtgttcattttccccctagttattagcaaatagagtagggagagttaaatcacctttcatattacctaatgcaatgtctccagcttttcttttacaacactttttatttcttaaaacatcacttgtttattaattttttttttaaaaaaagacacaa
>XR_004579899.1
agaaaaggctgagtattatgatgatgtcatcgacaccagtgacttcataagtgaTACAGGAAGAGTTGACCCACCAGAGGACTACGATGATGCCGTCACTGCTGGACCGATCCCTGATAACGTGGatgaggatgaagctgagaattatgatgacgccattacagctgatcag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU326444 True 523 lncRNA 0.37 6 1587770 1627055
XR_004579899.1 False 172 ncRNA 0.47 3 1626779 1627263

Neighbor

gene id symbol gene type direction distance location
LOC117599489 NA coding downstream 176155 1411131 ~ 1411615 (-)
LOC117599431 LOC108261705,LOC108261423,LOC108261555,LOC108279477,LOC108261687,LOC108261384,LOC108262265 coding downstream 191826 1391900 ~ 1395944 (-)
LOC117599496 NA coding downstream 199092 1388196 ~ 1388678 (-)
LOC117599430 LOC108279477,LOC108261384,LOC108261932 coding downstream 211451 1366111 ~ 1376319 (-)
LOC117599427 LOC108261400,LOC108261611,LOC108262466 coding downstream 332584 1242138 ~ 1255186 (-)
LOC117599435 NA coding upstream 744361 2371624 ~ 2373304 (-)
LOC117599527 NA coding upstream 752626 2379889 ~ 2381334 (-)
LOC117599436 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261610,LOC108261555,LOC108261687 coding upstream 785279 2412542 ~ 2415193 (-)
LOC117599531 NA coding upstream 801245 2428508 ~ 2428941 (-)
LOC117599505 NA coding upstream 826989 2454252 ~ 2455081 (-)
G275419 LOC108261384,LOC108261611,LOC108279477 non-coding downstream 14448 1459923 ~ 1573322 (-)
LOC117599633 NA non-coding downstream 91602 1496062 ~ 1496168 (-)
G275369 LOC108261400,LOC108279477,LOC108261423,LOC108262466,LOC108261705,LOC108261384,LOC108261555,LOC108261687,LOC108261611 non-coding downstream 125714 1396439 ~ 1462056 (-)
G275416 LOC108279477,LOC108261384,LOC108261705,LOC108261687,LOC108261555,LOC108262265,LOC108261423,LOC108444129,LOC108412318 non-coding downstream 129571 1441239 ~ 1458199 (-)
G275412 NA non-coding downstream 133564 1413392 ~ 1454206 (-)
LOC117599524 NA non-coding upstream 1760 1629023 ~ 1629581 (-)
LOC117599523 LOC108261687,LOC108279477,LOC108261423,LOC108261555,LOC108261705,LOC108261384,LOC108262466 non-coding upstream 4476 1631739 ~ 1632322 (-)
LOC117599504 NA non-coding upstream 59945 1687208 ~ 1687679 (-)
LOC117599499 NA non-coding upstream 64044 1691307 ~ 1692174 (-)
LOC117599500 NA non-coding upstream 87629 1714892 ~ 1715739 (-)
G275420 NA other downstream 10254 1465859 ~ 1577516 (-)
LOC117599432 LOC108262265,LOC108261610,LOC108261705,LOC108261932,LOC108261384,LOC108279477,LOC108261423,LOC108262337,LOC108261515,LOC108261554 other downstream 146625 1415905 ~ 1441145 (-)
LOC117599428 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other downstream 289871 1263749 ~ 1297899 (-)
LOC117599495 NA other downstream 304836 1282454 ~ 1282934 (-)
LOC117599510 NA other downstream 956383 629064 ~ 631387 (-)
G275475 LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other upstream 410972 2038235 ~ 2040062 (-)
G275480 LOC108261384,LOC108262358,LOC108261705,LOC108261423,LOC108279477,LOC108261555,LOC108261687,LOC108412318,LOC108415949 other upstream 434224 2061487 ~ 2062120 (-)
G275481 LOC108261611,LOC108261400,LOC108261743,LOC108262649 other upstream 438411 2065674 ~ 2069129 (-)
G275484 LOC108261400,LOC108261705,LOC108279477,LOC108261423,LOC108261611,LOC108262118,LOC108261384,LOC108262466,LOC108261687,LOC108261555 other upstream 461801 2089064 ~ 2111948 (-)
G275981 NA other upstream 1515271 3142534 ~ 3201297 (-)

Expression


Co-expression Network