G275465


Basic Information

Item Value
gene id G275465
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 1925027 ~ 2079405 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU326474
agacagtccagaagattatgatgatgtcatcactgaggaacaggatgtaggagagacagaagaatatgatgatgtggaggagaaatctcagaaagacagggaccatgtgactgagacacaccaccaaaggccttttctcaggaaattacaactttttaaatgcaaaaaaatgattttattttacttccaaaaatgtcatgttttctgaactgtgttcattttccccctagttattagcaaatagagtagggagagttaaatcacctttcatattacctaatgcaatgtctccagcttttcttttacaacactttttatttcttaaaacatcacttgtttattaattttttaaaaaagacacaatTACCTTTATGTTCAATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU326474 True 381 lncRNA 0.33 3 1925027 2079405

Neighbor

gene id symbol gene type direction distance location
LOC117599489 NA coding downstream 513412 1411131 ~ 1411615 (-)
LOC117599431 LOC108261705,LOC108261423,LOC108261555,LOC108279477,LOC108261687,LOC108261384,LOC108262265 coding downstream 529083 1391900 ~ 1395944 (-)
LOC117599496 NA coding downstream 536349 1388196 ~ 1388678 (-)
LOC117599430 LOC108279477,LOC108261384,LOC108261932 coding downstream 548708 1366111 ~ 1376319 (-)
LOC117599427 LOC108261400,LOC108261611,LOC108262466 coding downstream 669841 1242138 ~ 1255186 (-)
LOC117599435 NA coding upstream 292219 2371624 ~ 2373304 (-)
LOC117599527 NA coding upstream 300484 2379889 ~ 2381334 (-)
LOC117599436 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261610,LOC108261555,LOC108261687 coding upstream 333137 2412542 ~ 2415193 (-)
LOC117599531 NA coding upstream 349103 2428508 ~ 2428941 (-)
LOC117599505 NA coding upstream 374847 2454252 ~ 2455081 (-)
G275457 NA non-coding downstream 18613 1861497 ~ 1906414 (-)
LOC117599520 NA non-coding downstream 91172 1833446 ~ 1833855 (-)
LOC117599478 LOC108279477,LOC108261932 non-coding downstream 92244 1826816 ~ 1832783 (-)
LOC117599500 NA non-coding downstream 209288 1714892 ~ 1715739 (-)
LOC117599499 NA non-coding downstream 232853 1691307 ~ 1692174 (-)
LOC117599507 NA non-coding upstream 545 2079950 ~ 2080777 (-)
LOC117599528 NA non-coding upstream 26992 2106397 ~ 2107206 (-)
G275488 NA non-coding upstream 35804 2115209 ~ 2116471 (-)
LOC117599508 NA non-coding upstream 148712 2228117 ~ 2228945 (-)
G275500 NA non-coding upstream 152033 2231438 ~ 2232746 (-)
LOC117599486 LOC108279477 other downstream 297764 1587770 ~ 1627263 (-)
G275420 NA other downstream 347511 1465859 ~ 1577516 (-)
LOC117599432 LOC108262265,LOC108261610,LOC108261705,LOC108261932,LOC108261384,LOC108279477,LOC108261423,LOC108262337,LOC108261515,LOC108261554 other downstream 483882 1415905 ~ 1441145 (-)
LOC117599428 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other downstream 627128 1263749 ~ 1297899 (-)
G275484 LOC108261400,LOC108261705,LOC108279477,LOC108261423,LOC108261611,LOC108262118,LOC108261384,LOC108262466,LOC108261687,LOC108261555 other upstream 9659 2089064 ~ 2111948 (-)
G275981 NA other upstream 1063129 3142534 ~ 3201297 (-)
ppp1r12a ppp1r12a,LOC107694147,LOC106609419 other upstream 1147190 3226595 ~ 3335017 (-)
rps16 rps16 other upstream 1219852 3299257 ~ 3384923 (-)
lin7a lin7a other upstream 1350785 3430190 ~ 3494016 (-)

Expression


Co-expression Network