G275480 (LOC108261384,LOC108262358,LOC108261705,LOC108261423,LOC108279477,LOC108261555,LOC108261687,LOC108412318,LOC108415949)


Basic Information

Item Value
gene id G275480
gene name LOC108261384,LOC108262358,LOC108261705,LOC108261423,LOC108279477,LOC108261555,LOC108261687,LOC108412318,LOC108415949
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 2061487 ~ 2062120 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU326491
actgaacacaaacacatgtgtgtaacgggtttcagctgctctgggagtgaagctcatctggggaactgcagcagtgcacaacctgtcaactgcagctccggggaacagctgtacatcacctgctcagGTATCTTTAACCCCGCCCACAGCTCCATCAGGCTGGTTGGTTCTGGGGGAGACTGTGCAGGAAGGCTGGAGGTTTTCCACAGCGGCTCGtgggggacagtgtgtgatgactcgtgggatattgaggatgcgcaggtggtgtgcagacagctgcagtgtggagaggccctcagtacccacataccagcctggtttggtcctggaactgggtccatatggctgaatgaggtgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU326491 True 358 TUCP 0.56 2 2061487 2062120

Neighbor

gene id symbol gene type direction distance location
LOC117599489 NA coding downstream 649872 1411131 ~ 1411615 (-)
LOC117599431 LOC108261705,LOC108261423,LOC108261555,LOC108279477,LOC108261687,LOC108261384,LOC108262265 coding downstream 665543 1391900 ~ 1395944 (-)
LOC117599496 NA coding downstream 672809 1388196 ~ 1388678 (-)
LOC117599430 LOC108279477,LOC108261384,LOC108261932 coding downstream 685168 1366111 ~ 1376319 (-)
LOC117599427 LOC108261400,LOC108261611,LOC108262466 coding downstream 806301 1242138 ~ 1255186 (-)
LOC117599435 NA coding upstream 309504 2371624 ~ 2373304 (-)
LOC117599527 NA coding upstream 317769 2379889 ~ 2381334 (-)
LOC117599436 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261610,LOC108261555,LOC108261687 coding upstream 350422 2412542 ~ 2415193 (-)
LOC117599531 NA coding upstream 366388 2428508 ~ 2428941 (-)
LOC117599505 NA coding upstream 392132 2454252 ~ 2455081 (-)
LOC117599519 NA non-coding downstream 1557 2058728 ~ 2059930 (-)
LOC117599487 NA non-coding downstream 7305 2053698 ~ 2054182 (-)
LOC117599628 NA non-coding downstream 44322 2017059 ~ 2017165 (-)
LOC117599517 NA non-coding downstream 129313 1930930 ~ 1932174 (-)
LOC117599506 NA non-coding downstream 134326 1926333 ~ 1927161 (-)
LOC117599507 NA non-coding upstream 17830 2079950 ~ 2080777 (-)
LOC117599528 NA non-coding upstream 44277 2106397 ~ 2107206 (-)
G275488 NA non-coding upstream 53089 2115209 ~ 2116471 (-)
LOC117599508 NA non-coding upstream 165997 2228117 ~ 2228945 (-)
G275500 NA non-coding upstream 169318 2231438 ~ 2232746 (-)
G275475 LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other downstream 21425 2038235 ~ 2040062 (-)
LOC117599486 LOC108279477 other downstream 434224 1587770 ~ 1627263 (-)
G275420 NA other downstream 483971 1465859 ~ 1577516 (-)
LOC117599432 LOC108262265,LOC108261610,LOC108261705,LOC108261932,LOC108261384,LOC108279477,LOC108261423,LOC108262337,LOC108261515,LOC108261554 other downstream 620342 1415905 ~ 1441145 (-)
LOC117599428 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other downstream 763588 1263749 ~ 1297899 (-)
G275481 LOC108261611,LOC108261400,LOC108261743,LOC108262649 other upstream 3554 2065674 ~ 2069129 (-)
G275484 LOC108261400,LOC108261705,LOC108279477,LOC108261423,LOC108261611,LOC108262118,LOC108261384,LOC108262466,LOC108261687,LOC108261555 other upstream 26944 2089064 ~ 2111948 (-)
G275981 NA other upstream 1080414 3142534 ~ 3201297 (-)
ppp1r12a ppp1r12a,LOC107694147,LOC106609419 other upstream 1164475 3226595 ~ 3335017 (-)
rps16 rps16 other upstream 1237137 3299257 ~ 3384923 (-)

Expression


Co-expression Network