G275481 (LOC108261611,LOC108261400,LOC108261743,LOC108262649)


Basic Information

Item Value
gene id G275481
gene name LOC108261611,LOC108261400,LOC108261743,LOC108262649
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 2065674 ~ 2069129 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU326492
gtggaggtgaacacatcgtgtacagcgaggagggagatggaaatctgtctgacttttattcttctctcatccacactcacactcacagcagctggcactgtgaggttggtgaatggaagtcgctgtgttgggagagtggaggttcttcatgatggacagtggggaacagtgtgtgatgataactgggatatgagagaagctgcagtggtgtgtagagagctgcactgtggggagcctgtaaatGTGCGGTA
>TU326493
gtggaggtgaacacatcgtgtacagcgaggagggagatggaaatctgtctgacttttattcttctctcatccacactcacactcacagcagctggcactgtgaggttggtgaatggtggaagtcgctgtgctgggagagtggaggttcttcatgatggacagtggggaacagtgtgtagtgATAGCTGGGACGAGGTcgatgctgcagtggtgtgtagagagctgcgctgtggggagGCTGTAAATGCACCAAAATACAGTCACTATGGAcgaggatcaggaccaatctggatggATGATGTGGCCTGTAGTGGATCAGAGTCGACTCTGAAGGGCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU326492 False 251 lncRNA 0.51 3 2065674 2069129
TU326493 True 338 TUCP 0.52 2 2067657 2069129

Neighbor

gene id symbol gene type direction distance location
LOC117599489 NA coding downstream 654059 1411131 ~ 1411615 (-)
LOC117599431 LOC108261705,LOC108261423,LOC108261555,LOC108279477,LOC108261687,LOC108261384,LOC108262265 coding downstream 669730 1391900 ~ 1395944 (-)
LOC117599496 NA coding downstream 676996 1388196 ~ 1388678 (-)
LOC117599430 LOC108279477,LOC108261384,LOC108261932 coding downstream 689355 1366111 ~ 1376319 (-)
LOC117599427 LOC108261400,LOC108261611,LOC108262466 coding downstream 810488 1242138 ~ 1255186 (-)
LOC117599435 NA coding upstream 302495 2371624 ~ 2373304 (-)
LOC117599527 NA coding upstream 310760 2379889 ~ 2381334 (-)
LOC117599436 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261610,LOC108261555,LOC108261687 coding upstream 343413 2412542 ~ 2415193 (-)
LOC117599531 NA coding upstream 359379 2428508 ~ 2428941 (-)
LOC117599505 NA coding upstream 385123 2454252 ~ 2455081 (-)
LOC117599519 NA non-coding downstream 5744 2058728 ~ 2059930 (-)
LOC117599487 NA non-coding downstream 11492 2053698 ~ 2054182 (-)
LOC117599628 NA non-coding downstream 48509 2017059 ~ 2017165 (-)
LOC117599517 NA non-coding downstream 133500 1930930 ~ 1932174 (-)
LOC117599506 NA non-coding downstream 138513 1926333 ~ 1927161 (-)
LOC117599507 NA non-coding upstream 10821 2079950 ~ 2080777 (-)
LOC117599528 NA non-coding upstream 37268 2106397 ~ 2107206 (-)
G275488 NA non-coding upstream 46080 2115209 ~ 2116471 (-)
LOC117599508 NA non-coding upstream 158988 2228117 ~ 2228945 (-)
G275500 NA non-coding upstream 162309 2231438 ~ 2232746 (-)
G275480 LOC108261384,LOC108262358,LOC108261705,LOC108261423,LOC108279477,LOC108261555,LOC108261687,LOC108412318,LOC108415949 other downstream 3554 2061487 ~ 2062120 (-)
G275475 LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other downstream 25612 2038235 ~ 2040062 (-)
LOC117599486 LOC108279477 other downstream 438411 1587770 ~ 1627263 (-)
G275420 NA other downstream 488158 1465859 ~ 1577516 (-)
LOC117599432 LOC108262265,LOC108261610,LOC108261705,LOC108261932,LOC108261384,LOC108279477,LOC108261423,LOC108262337,LOC108261515,LOC108261554 other downstream 624529 1415905 ~ 1441145 (-)
G275484 LOC108261400,LOC108261705,LOC108279477,LOC108261423,LOC108261611,LOC108262118,LOC108261384,LOC108262466,LOC108261687,LOC108261555 other upstream 19935 2089064 ~ 2111948 (-)
G275981 NA other upstream 1073405 3142534 ~ 3201297 (-)
ppp1r12a ppp1r12a,LOC107694147,LOC106609419 other upstream 1157466 3226595 ~ 3335017 (-)
rps16 rps16 other upstream 1230128 3299257 ~ 3384923 (-)
lin7a lin7a other upstream 1361061 3430190 ~ 3494016 (-)

Expression


Co-expression Network