G275520 (LOC108261384,LOC108262118,LOC108279477,LOC108261705,LOC108261400,LOC108261611,LOC108261423,LOC108444125,LOC108415949)


Basic Information

Item Value
gene id G275520
gene name LOC108261384,LOC108262118,LOC108279477,LOC108261705,LOC108261400,LOC108261611,LOC108261423,LOC108444125,LOC108415949
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 2436635 ~ 2437067 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU326537
gatgctggagtcacctgctcaggtgaaaatgtgagactcactgctggtcctcaccggtgctctgggagagtggaggtgtttcatggaggttcctggtccacagtgtgtgatgctgactttgaccagcaggatgcagaggttgtgtgtcgagagctgggctgtgggattcctgtggaggtgctgggatcagctgcttttggccgaggggagggtcaggtgtggacagaggagcttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU326537 True 235 lncRNA 0.57 2 2436635 2437067

Neighbor

gene id symbol gene type direction distance location
LOC117599531 NA coding downstream 7694 2428508 ~ 2428941 (-)
LOC117599436 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261610,LOC108261555,LOC108261687 coding downstream 21442 2412542 ~ 2415193 (-)
LOC117599527 NA coding downstream 55301 2379889 ~ 2381334 (-)
LOC117599435 NA coding downstream 63331 2371624 ~ 2373304 (-)
LOC117599489 NA coding downstream 1025020 1411131 ~ 1411615 (-)
LOC117599505 NA coding upstream 17185 2454252 ~ 2455081 (-)
LOC117599471 LOC108261384,LOC108279477,LOC108261705,LOC108261423,LOC108261687,LOC108261555,LOC108261932,LOC108261610,LOC108262265 coding upstream 45316 2482383 ~ 2548694 (-)
LOC117599490 NA coding upstream 69520 2506587 ~ 2507094 (-)
LOC117599488 NA coding upstream 106080 2543147 ~ 2543631 (-)
LOC117599438 NA coding upstream 191598 2628665 ~ 2630328 (-)
LOC117599475 LOC108279477 non-coding downstream 26531 2377505 ~ 2410104 (-)
LOC117599509 LOC108261384,LOC108261932,LOC108279477,LOC108261610,LOC108261705,LOC108261515,LOC108262337,LOC108261554 non-coding downstream 53177 2381342 ~ 2383458 (-)
G275504 NA non-coding downstream 164135 2272002 ~ 2272500 (-)
G275501 NA non-coding downstream 199522 2236032 ~ 2237113 (-)
G275500 NA non-coding downstream 203889 2231438 ~ 2232746 (-)
LOC117599518 NA non-coding upstream 20574 2457641 ~ 2458841 (-)
LOC117599514 LOC108261932,LOC108261384,LOC108279477 non-coding upstream 21994 2459061 ~ 2460112 (-)
G275523 LOC108261400,LOC108261705,LOC108261423,LOC108261611,LOC108262466,LOC108261555,LOC108261384,LOC108279477 non-coding upstream 77677 2514744 ~ 2549652 (-)
G275524 LOC108261611,LOC108261423 non-coding upstream 98377 2535444 ~ 2569264 (-)
G275536 LOC108261384,LOC108261611,LOC108262118,LOC108279477 non-coding upstream 195359 2632426 ~ 2709379 (-)
G275484 LOC108261400,LOC108261705,LOC108279477,LOC108261423,LOC108261611,LOC108262118,LOC108261384,LOC108262466,LOC108261687,LOC108261555 other downstream 324687 2089064 ~ 2111948 (-)
G275481 LOC108261611,LOC108261400,LOC108261743,LOC108262649 other downstream 367506 2065674 ~ 2069129 (-)
G275480 LOC108261384,LOC108262358,LOC108261705,LOC108261423,LOC108279477,LOC108261555,LOC108261687,LOC108412318,LOC108415949 other downstream 374515 2061487 ~ 2062120 (-)
G275475 LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other downstream 396573 2038235 ~ 2040062 (-)
LOC117599486 LOC108279477 other downstream 809372 1587770 ~ 1627263 (-)
G275981 NA other upstream 705467 3142534 ~ 3201297 (-)
ppp1r12a ppp1r12a,LOC107694147,LOC106609419 other upstream 789528 3226595 ~ 3335017 (-)
rps16 rps16 other upstream 862190 3299257 ~ 3384923 (-)
lin7a lin7a other upstream 993123 3430190 ~ 3494016 (-)
G276075 NA other upstream 1099930 3536997 ~ 3538743 (-)

Expression


Co-expression Network