G275523 (LOC108261400,LOC108261705,LOC108261423,LOC108261611,LOC108262466,LOC108261555,LOC108261384,LOC108279477)


Basic Information

Item Value
gene id G275523
gene name LOC108261400,LOC108261705,LOC108261423,LOC108261611,LOC108262466,LOC108261555,LOC108261384,LOC108279477
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 2514744 ~ 2549652 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU326540
cctgtggaggtgctgggatcagctgcttttggccgaggggagggtcaggtgtggacagaggagcttcagtgtagaggcaACGAATCTGACATTAccttctgtccaacatcatcttcactcaaacactcagactgctcccattacaatgatgtgggattaatatgttctggtcacacagaggctcggctggtgaacggatcggactcctgttctggtcgagtggagctccagtacctcagtgagtggggcacagtttgtgctgtaggctgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU326540 True 270 lncRNA 0.53 3 2514744 2549652

Neighbor

gene id symbol gene type direction distance location
LOC117599490 NA coding downstream 7650 2506587 ~ 2507094 (-)
LOC117599505 NA coding downstream 59663 2454252 ~ 2455081 (-)
LOC117599531 NA coding downstream 85803 2428508 ~ 2428941 (-)
LOC117599436 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261610,LOC108261555,LOC108261687 coding downstream 99551 2412542 ~ 2415193 (-)
LOC117599527 NA coding downstream 133410 2379889 ~ 2381334 (-)
LOC117599438 NA coding upstream 79013 2628665 ~ 2630328 (-)
LOC117599439 LOC108261384,LOC108279477,LOC108261932,LOC108261705,LOC108261610,LOC108261515,LOC108261687,LOC108261554,LOC108262337 coding upstream 114745 2664397 ~ 2667515 (-)
LOC117599440 LOC108261400,LOC108279477,LOC108262466,LOC108261384,LOC108261705,LOC108261423,LOC108261555,LOC108261611,LOC108261687 coding upstream 118703 2668355 ~ 2669336 (-)
LOC117599441 LOC108261611 coding upstream 122369 2672021 ~ 2678032 (-)
pawr pawr coding upstream 655636 3205288 ~ 3246996 (-)
LOC117599514 LOC108261932,LOC108261384,LOC108279477 non-coding downstream 54632 2459061 ~ 2460112 (-)
LOC117599518 NA non-coding downstream 55903 2457641 ~ 2458841 (-)
G275520 LOC108261384,LOC108262118,LOC108279477,LOC108261705,LOC108261400,LOC108261611,LOC108261423,LOC108444125,LOC108415949 non-coding downstream 77677 2436635 ~ 2437067 (-)
LOC117599475 LOC108279477 non-coding downstream 104640 2377505 ~ 2410104 (-)
LOC117599509 LOC108261384,LOC108261932,LOC108279477,LOC108261610,LOC108261705,LOC108261515,LOC108262337,LOC108261554 non-coding downstream 131286 2381342 ~ 2383458 (-)
G275536 LOC108261384,LOC108261611,LOC108262118,LOC108279477 non-coding upstream 82774 2632426 ~ 2709379 (-)
G275815 NA non-coding upstream 285048 2834700 ~ 2845904 (-)
G275891 NA non-coding upstream 430185 2979837 ~ 2981862 (-)
G276021 NA non-coding upstream 668067 3217719 ~ 3221204 (-)
G276022 NA non-coding upstream 668537 3218189 ~ 3219050 (-)
G275484 LOC108261400,LOC108261705,LOC108279477,LOC108261423,LOC108261611,LOC108262118,LOC108261384,LOC108262466,LOC108261687,LOC108261555 other downstream 402796 2089064 ~ 2111948 (-)
G275481 LOC108261611,LOC108261400,LOC108261743,LOC108262649 other downstream 445615 2065674 ~ 2069129 (-)
G275480 LOC108261384,LOC108262358,LOC108261705,LOC108261423,LOC108279477,LOC108261555,LOC108261687,LOC108412318,LOC108415949 other downstream 452624 2061487 ~ 2062120 (-)
G275475 LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other downstream 474682 2038235 ~ 2040062 (-)
LOC117599486 LOC108279477 other downstream 887481 1587770 ~ 1627263 (-)
G275981 NA other upstream 592882 3142534 ~ 3201297 (-)
ppp1r12a ppp1r12a,LOC107694147,LOC106609419 other upstream 676943 3226595 ~ 3335017 (-)
rps16 rps16 other upstream 749605 3299257 ~ 3384923 (-)
lin7a lin7a other upstream 880538 3430190 ~ 3494016 (-)
G276075 NA other upstream 987345 3536997 ~ 3538743 (-)

Expression


Co-expression Network