G275524 (LOC108261611,LOC108261423)


Basic Information

Item Value
gene id G275524
gene name LOC108261611,LOC108261423
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 2535444 ~ 2569264 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU326541
aatctgtctgacttttattcttctctcatccacactcacactcacagcagctgacagtgtgaggttggtgaatggaagtcgctgtgctgggagagtggaggttcttcatgatggacagtggggaacagtgtgtgatgatgactgggatatgagagaagctgcagtggtgtgtagagagctgcactgtggggagcctgtaaatGTGCGGTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU326541 True 211 lncRNA 0.50 3 2535444 2569264

Neighbor

gene id symbol gene type direction distance location
LOC117599490 NA coding downstream 28350 2506587 ~ 2507094 (-)
LOC117599505 NA coding downstream 80363 2454252 ~ 2455081 (-)
LOC117599531 NA coding downstream 106503 2428508 ~ 2428941 (-)
LOC117599436 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261610,LOC108261555,LOC108261687 coding downstream 120251 2412542 ~ 2415193 (-)
LOC117599527 NA coding downstream 154110 2379889 ~ 2381334 (-)
LOC117599438 NA coding upstream 59401 2628665 ~ 2630328 (-)
LOC117599439 LOC108261384,LOC108279477,LOC108261932,LOC108261705,LOC108261610,LOC108261515,LOC108261687,LOC108261554,LOC108262337 coding upstream 95133 2664397 ~ 2667515 (-)
LOC117599440 LOC108261400,LOC108279477,LOC108262466,LOC108261384,LOC108261705,LOC108261423,LOC108261555,LOC108261611,LOC108261687 coding upstream 99091 2668355 ~ 2669336 (-)
LOC117599441 LOC108261611 coding upstream 102757 2672021 ~ 2678032 (-)
pawr pawr coding upstream 636024 3205288 ~ 3246996 (-)
LOC117599514 LOC108261932,LOC108261384,LOC108279477 non-coding downstream 75332 2459061 ~ 2460112 (-)
LOC117599518 NA non-coding downstream 76603 2457641 ~ 2458841 (-)
G275520 LOC108261384,LOC108262118,LOC108279477,LOC108261705,LOC108261400,LOC108261611,LOC108261423,LOC108444125,LOC108415949 non-coding downstream 98377 2436635 ~ 2437067 (-)
LOC117599475 LOC108279477 non-coding downstream 125340 2377505 ~ 2410104 (-)
G275536 LOC108261384,LOC108261611,LOC108262118,LOC108279477 non-coding upstream 63162 2632426 ~ 2709379 (-)
G275815 NA non-coding upstream 265436 2834700 ~ 2845904 (-)
G275891 NA non-coding upstream 410573 2979837 ~ 2981862 (-)
G276021 NA non-coding upstream 648455 3217719 ~ 3221204 (-)
G276022 NA non-coding upstream 648925 3218189 ~ 3219050 (-)
G275484 LOC108261400,LOC108261705,LOC108279477,LOC108261423,LOC108261611,LOC108262118,LOC108261384,LOC108262466,LOC108261687,LOC108261555 other downstream 423496 2089064 ~ 2111948 (-)
G275481 LOC108261611,LOC108261400,LOC108261743,LOC108262649 other downstream 466315 2065674 ~ 2069129 (-)
G275480 LOC108261384,LOC108262358,LOC108261705,LOC108261423,LOC108279477,LOC108261555,LOC108261687,LOC108412318,LOC108415949 other downstream 473324 2061487 ~ 2062120 (-)
G275475 LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other downstream 495382 2038235 ~ 2040062 (-)
LOC117599486 LOC108279477 other downstream 908181 1587770 ~ 1627263 (-)
G275981 NA other upstream 573270 3142534 ~ 3201297 (-)
ppp1r12a ppp1r12a,LOC107694147,LOC106609419 other upstream 657331 3226595 ~ 3335017 (-)
rps16 rps16 other upstream 729993 3299257 ~ 3384923 (-)
lin7a lin7a other upstream 860926 3430190 ~ 3494016 (-)
G276075 NA other upstream 967733 3536997 ~ 3538743 (-)

Expression


Co-expression Network