G275536 (LOC108261384,LOC108261611,LOC108262118,LOC108279477)


Basic Information

Item Value
gene id G275536
gene name LOC108261384,LOC108261611,LOC108262118,LOC108279477
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 2632426 ~ 2709379 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU326553
tgaagctcctctgtccacacctgaccctcccctcggccaaaagcagctgatcccagcacctccacaggaatcccacagcccagctctcgacacacaacctctgcatcctgctgatcaaagtcagcatcacacactgtggaccaggaacctccatgaagcacctccactctcccagagcaccgcagtttacctgagcagatgactccagcatcaagAGTATGATCACAGTAATGTCCCCCTCGTGAGCTACAGTTgttcagtgtcgactctgatcctctacagtacaaatcatatatccagattggtcctgatc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU326553 True 313 lncRNA 0.53 3 2632426 2709379

Neighbor

gene id symbol gene type direction distance location
LOC117599438 NA coding downstream 2098 2628665 ~ 2630328 (-)
LOC117599471 LOC108261384,LOC108279477,LOC108261705,LOC108261423,LOC108261687,LOC108261555,LOC108261932,LOC108261610,LOC108262265 coding downstream 83732 2482383 ~ 2548694 (-)
LOC117599488 NA coding downstream 88795 2543147 ~ 2543631 (-)
LOC117599490 NA coding downstream 125332 2506587 ~ 2507094 (-)
LOC117599505 NA coding downstream 177345 2454252 ~ 2455081 (-)
pawr pawr coding upstream 495909 3205288 ~ 3246996 (-)
ppfia2 ppfia2,LOC107680027,LOC107694182 coding upstream 835697 3545076 ~ 3691686 (-)
hcls1 LOC108279643,LOC107095911,LOC105918344,LOC103358095,LOC102201149,LOC102292035,LOC101481917 coding upstream 1029505 3738884 ~ 3755857 (-)
orc5 orc5 coding upstream 1088962 3798341 ~ 3811616 (-)
kmt2e kmt2e coding upstream 1148136 3857515 ~ 3906653 (-)
G275524 LOC108261611,LOC108261423 non-coding downstream 63162 2535444 ~ 2569264 (-)
G275523 LOC108261400,LOC108261705,LOC108261423,LOC108261611,LOC108262466,LOC108261555,LOC108261384,LOC108279477 non-coding downstream 82774 2514744 ~ 2549652 (-)
LOC117599514 LOC108261932,LOC108261384,LOC108279477 non-coding downstream 172314 2459061 ~ 2460112 (-)
LOC117599518 NA non-coding downstream 173585 2457641 ~ 2458841 (-)
G275520 LOC108261384,LOC108262118,LOC108279477,LOC108261705,LOC108261400,LOC108261611,LOC108261423,LOC108444125,LOC108415949 non-coding downstream 195359 2436635 ~ 2437067 (-)
G275815 NA non-coding upstream 125321 2834700 ~ 2845904 (-)
G275891 NA non-coding upstream 270458 2979837 ~ 2981862 (-)
G276021 NA non-coding upstream 508340 3217719 ~ 3221204 (-)
G276022 NA non-coding upstream 508810 3218189 ~ 3219050 (-)
LOC113523901 NA non-coding upstream 646075 3355454 ~ 3356433 (-)
G275484 LOC108261400,LOC108261705,LOC108279477,LOC108261423,LOC108261611,LOC108262118,LOC108261384,LOC108262466,LOC108261687,LOC108261555 other downstream 520478 2089064 ~ 2111948 (-)
G275481 LOC108261611,LOC108261400,LOC108261743,LOC108262649 other downstream 563297 2065674 ~ 2069129 (-)
G275480 LOC108261384,LOC108262358,LOC108261705,LOC108261423,LOC108279477,LOC108261555,LOC108261687,LOC108412318,LOC108415949 other downstream 570306 2061487 ~ 2062120 (-)
G275475 LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other downstream 592364 2038235 ~ 2040062 (-)
LOC117599486 LOC108279477 other downstream 1005163 1587770 ~ 1627263 (-)
G275981 NA other upstream 433155 3142534 ~ 3201297 (-)
ppp1r12a ppp1r12a,LOC107694147,LOC106609419 other upstream 517216 3226595 ~ 3335017 (-)
rps16 rps16 other upstream 589878 3299257 ~ 3384923 (-)
lin7a lin7a other upstream 720811 3430190 ~ 3494016 (-)
G276075 NA other upstream 827618 3536997 ~ 3538743 (-)

Expression


Co-expression Network