G275891


Basic Information

Item Value
gene id G275891
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 2979837 ~ 2981862 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU326970
TAACAGTGTAACACCACATAACACAGCgtaacacagtgtaacacaACGTAACAGTGTAACACAACATAAGACAGCATAACAGCGTAAGACAGCATAACAGCATAAGACAGCATAACAGCGTAACACAGCGTAACAGTGTAACACCACGTAACACAGCGTAACACAGCGTAACACAACGTAAGACAGCATAACACAGCGTAACACAGCATCAGTTTTGCTCTCCTGGCTTCCAGCCACGCACGGCTGTGACATCATCGAGAGATCGCGAGTTGAAATGCTGACGATGACACAGCCATACGCTATAGAAGAGTATTTTGGAGACATTTTGGTAAATATTTTTCCtcgataaaaaataaaagcagagtgAAAGGAAGCACTTTCGCTTGAAGAAGCACATCACTGGTTTAAAAAACGAAGCAGTCATGCATCACACGGTGTCACGTCTCTCCTTATCACTTTCTATTCTCTGTATTTTCCATGTGGAGGAGCTGAGAAGTGGTTCATTTGACAGTAATAGCGGAAGCGACAGACGGAAATGTATCAAAATAGTCAACAGAAAGAAGAAGCTGAAACGTTTTGCTTTCtgaccatgtgtgtgtttttactaaTACTCCTCCACACGTCACAGTGACAGCCATGAAGACGTGTGTATAAGGCTGTGCTCGCTTTATATCCTACACTATACTGTAGTTTATACACACTTACTCACATGCTAGCACACATTCAGATTGCTGCTTTAATCTGTGATtttccctctgggattaataacactatctatctatctatctatctatctatctatctatctatccatctatctatctatctatctatctaaactgggacattttttaattaaatgattatttcagTTCTCAAAAGAGAACATGTTTCAGTAAAACTACCAGCAGAACAGCGAGTGTCTGATGAGAAACCAGGCCACGCAGAAGATGAGTGTACACTGTGGACACGTGAAAGTTGCTGGAAGTACACCGTGGGACACGTGAAAGTTGCTGGAAGTACACTGTGGACACGTGAAAGTTGCTGAAAGTACACTGTGGACACGTGAAAGTTGCTGAAAGTACACTGTGGACATGTTGAAGTTGCTGGAAGTACACTGTGGGACACGTGAAAGTTGCTGGAAGTACACTGTGGGACACGTGAAAGTTGTTGAAAGTACACTGTGGACACGTGAAAGTTGTTGAAAGTACACTGTGGACACGTGAAAGTTGCTGAAAGTACACCGTGGGACACATGAAAGTTGCTGAAAGTACACTGTGGACACGTGAAAGTTGCTGGAAGTACACTGTGGACACGTGAAAGTTGCTGAAAGTACACTGTGGACACGTGAAAGTTGCTGAAAGTACACTGTGGGACACGTGAAAGTTGCTGGAAGTACACTGTGGACACGTGAAAGTTGCTGAAAGTACACTGTGGTCACGTGAAAGTTGCTGAAAGTACACTGTGGACACGTGAAAGTTGCTGAAAGTACACTGTGGGACACGTGAAAGTTGCTGGAAGTACACTGTGGGACACGTGAAAGTTGCTGGAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU326970 True 1553 lncRNA 0.43 3 2979837 2981862

Neighbor

gene id symbol gene type direction distance location
LOC117599441 LOC108261611 coding downstream 301805 2672021 ~ 2678032 (-)
LOC117599440 LOC108261400,LOC108279477,LOC108262466,LOC108261384,LOC108261705,LOC108261423,LOC108261555,LOC108261611,LOC108261687 coding downstream 310501 2668355 ~ 2669336 (-)
LOC117599439 LOC108261384,LOC108279477,LOC108261932,LOC108261705,LOC108261610,LOC108261515,LOC108261687,LOC108261554,LOC108262337 coding downstream 312322 2664397 ~ 2667515 (-)
LOC117599438 NA coding downstream 349509 2628665 ~ 2630328 (-)
LOC117599488 NA coding downstream 436206 2543147 ~ 2543631 (-)
pawr pawr coding upstream 223426 3205288 ~ 3246996 (-)
ppfia2 ppfia2,LOC107680027,LOC107694182 coding upstream 563214 3545076 ~ 3691686 (-)
hcls1 LOC108279643,LOC107095911,LOC105918344,LOC103358095,LOC102201149,LOC102292035,LOC101481917 coding upstream 757022 3738884 ~ 3755857 (-)
orc5 orc5 coding upstream 816479 3798341 ~ 3811616 (-)
kmt2e kmt2e coding upstream 875653 3857515 ~ 3906653 (-)
G275815 NA non-coding downstream 133933 2834700 ~ 2845904 (-)
G275536 LOC108261384,LOC108261611,LOC108262118,LOC108279477 non-coding downstream 270458 2632426 ~ 2709379 (-)
G275524 LOC108261611,LOC108261423 non-coding downstream 410573 2535444 ~ 2569264 (-)
G275523 LOC108261400,LOC108261705,LOC108261423,LOC108261611,LOC108262466,LOC108261555,LOC108261384,LOC108279477 non-coding downstream 430185 2514744 ~ 2549652 (-)
LOC117599514 LOC108261932,LOC108261384,LOC108279477 non-coding downstream 519725 2459061 ~ 2460112 (-)
G276021 NA non-coding upstream 235857 3217719 ~ 3221204 (-)
G276022 NA non-coding upstream 236327 3218189 ~ 3219050 (-)
LOC113523901 NA non-coding upstream 373592 3355454 ~ 3356433 (-)
G276038 NA non-coding upstream 390762 3372624 ~ 3373018 (-)
G276049 NA non-coding upstream 433006 3414868 ~ 3415140 (-)
G275484 LOC108261400,LOC108261705,LOC108279477,LOC108261423,LOC108261611,LOC108262118,LOC108261384,LOC108262466,LOC108261687,LOC108261555 other downstream 867889 2089064 ~ 2111948 (-)
G275481 LOC108261611,LOC108261400,LOC108261743,LOC108262649 other downstream 910708 2065674 ~ 2069129 (-)
G275480 LOC108261384,LOC108262358,LOC108261705,LOC108261423,LOC108279477,LOC108261555,LOC108261687,LOC108412318,LOC108415949 other downstream 917717 2061487 ~ 2062120 (-)
G275475 LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other downstream 939775 2038235 ~ 2040062 (-)
LOC117599486 LOC108279477 other downstream 1352574 1587770 ~ 1627263 (-)
G275981 NA other upstream 160672 3142534 ~ 3201297 (-)
ppp1r12a ppp1r12a,LOC107694147,LOC106609419 other upstream 244733 3226595 ~ 3335017 (-)
rps16 rps16 other upstream 317395 3299257 ~ 3384923 (-)
lin7a lin7a other upstream 448328 3430190 ~ 3494016 (-)
G276075 NA other upstream 555135 3536997 ~ 3538743 (-)

Expression


Co-expression Network