G276022


Basic Information

Item Value
gene id G276022
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 3218189 ~ 3219050 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU327114
taggatagagcagtaatgttaggaacatagagcagtaatgttactaggatagagcagtaatgttactagcatagagcagtaatgttaggaacatagagcagtaatgttactaggatagggcagtaatgttactaggatagggcagtaatgttactagatcatgcagtaatgttactaggatagagcagtaatgttactaggatagggcagtaatgttactaggatagagcagtaatgttactaggatagagcagtaatgttactaggatagggcagtaatgttactaggatagagcagtaatgttactagcatAGAGCAGTACTGATACTAggatagagcaGTAATGTTAGGAAgatagagcagtaatgttactagatagagcagtaatgttactagatagagcagtaatgttaggaacatagagcagtaatgttactagcatagggcagtaatgttactagcatagggcagtaatgttactaggatagagcagtaatgttactagcatAGAGCAGTACTGATACTAggatagagcagtaatgttactaggatagggcagtaatgttactaggatagagcagtaatgttactagcatagggcagtaatgttactaggatagagcagtaatgttactaggatagagcagtaatgttactaggatagggcagtaatgttactaggata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU327114 True 686 lncRNA 0.38 2 3218189 3219050

Neighbor

gene id symbol gene type direction distance location
LOC117599441 LOC108261611 coding downstream 540157 2672021 ~ 2678032 (-)
LOC117599440 LOC108261400,LOC108279477,LOC108262466,LOC108261384,LOC108261705,LOC108261423,LOC108261555,LOC108261611,LOC108261687 coding downstream 548853 2668355 ~ 2669336 (-)
LOC117599439 LOC108261384,LOC108279477,LOC108261932,LOC108261705,LOC108261610,LOC108261515,LOC108261687,LOC108261554,LOC108262337 coding downstream 550674 2664397 ~ 2667515 (-)
LOC117599438 NA coding downstream 587861 2628665 ~ 2630328 (-)
LOC117599488 NA coding downstream 674558 2543147 ~ 2543631 (-)
ppfia2 ppfia2,LOC107680027,LOC107694182 coding upstream 326026 3545076 ~ 3691686 (-)
hcls1 LOC108279643,LOC107095911,LOC105918344,LOC103358095,LOC102201149,LOC102292035,LOC101481917 coding upstream 519834 3738884 ~ 3755857 (-)
orc5 orc5 coding upstream 579291 3798341 ~ 3811616 (-)
kmt2e kmt2e coding upstream 638465 3857515 ~ 3906653 (-)
kdm7aa kdm7a coding upstream 700252 3919302 ~ 3945301 (-)
G275891 NA non-coding downstream 236327 2979837 ~ 2981862 (-)
G275815 NA non-coding downstream 372285 2834700 ~ 2845904 (-)
G275536 LOC108261384,LOC108261611,LOC108262118,LOC108279477 non-coding downstream 508810 2632426 ~ 2709379 (-)
G275524 LOC108261611,LOC108261423 non-coding downstream 648925 2535444 ~ 2569264 (-)
G275523 LOC108261400,LOC108261705,LOC108261423,LOC108261611,LOC108262466,LOC108261555,LOC108261384,LOC108279477 non-coding downstream 668537 2514744 ~ 2549652 (-)
LOC113523901 NA non-coding upstream 136404 3355454 ~ 3356433 (-)
G276038 NA non-coding upstream 153574 3372624 ~ 3373018 (-)
G276049 NA non-coding upstream 195818 3414868 ~ 3415140 (-)
LOC117599595 NA non-coding upstream 345985 3565035 ~ 3571926 (-)
G276153 NA non-coding upstream 420917 3639967 ~ 3640783 (-)
G275981 NA other downstream 16892 3142534 ~ 3201297 (-)
G275484 LOC108261400,LOC108261705,LOC108279477,LOC108261423,LOC108261611,LOC108262118,LOC108261384,LOC108262466,LOC108261687,LOC108261555 other downstream 1106241 2089064 ~ 2111948 (-)
G275481 LOC108261611,LOC108261400,LOC108261743,LOC108262649 other downstream 1149060 2065674 ~ 2069129 (-)
G275480 LOC108261384,LOC108262358,LOC108261705,LOC108261423,LOC108279477,LOC108261555,LOC108261687,LOC108412318,LOC108415949 other downstream 1156069 2061487 ~ 2062120 (-)
G275475 LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other downstream 1178127 2038235 ~ 2040062 (-)
ppp1r12a ppp1r12a,LOC107694147,LOC106609419 other upstream 7545 3226595 ~ 3335017 (-)
rps16 rps16 other upstream 80207 3299257 ~ 3384923 (-)
lin7a lin7a other upstream 211140 3430190 ~ 3494016 (-)
G276075 NA other upstream 317947 3536997 ~ 3538743 (-)
G276340 NA other upstream 517080 3736130 ~ 3737077 (-)

Expression


Co-expression Network