G276075


Basic Information

Item Value
gene id G276075
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 3536997 ~ 3538743 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU327175
cgaGCTTCAAAAAGCTTGTATGTACACTTCAATATTCTAATTCATAcgaatcaaataaataatacgAGCTGAAATTACGCATAGAGAACGATTTATATGCGAATACATGAGAACAGCACAGAGGAGGCTCATGGACATTGTTATGGTTACAGGACTCGGCCGTGAGAAAAGCGTGCACCTTATACGGCTTGGCGTTGATGAGACTGGCCAGAGAGGATCGTGGGATTTTTCCCGAGCGGGTTTTGGGCAGAGTTCTGATGAACAGAACTTTCCGGAACGCAGCGACCGGACCGATGTTCTCTCGCACCAAACTGACCAACTCCTTCACCACTACGGCTTTATTCTTCTCAaaaCGTGTTGGAGGACACACAGTGCCAGAGGGACGTGTCCTTTCAGTGAGTCCTCCAGTCCCAGTACAGCACAGTCCACTACCCCGGGGTGCTgcaataaacactaaacacacacacacacacacacacacacacacacacacacacacacacacacacacactttaggaTCATATGTTAATACTTGCAGAGTTTCAGCTTTAGATGCTCCGCCCACAGGCCATGCACAGTCTGATAATCTCGTGACCTGAAAAGTGCACATAAGTTGTCATGATCTgcgtctcaaatcgaaaacCTTCACGatacattcaaaatatttactaatccagaaaatccagaagactggtacactgcttcctagcaagctggctCTGTACTCGTGCTCTGCACAAAGACAATacagttgaatctaatctaatcaacAGTTTCAGCAACAAAACCCTTTCAGTAGGTTTCAGAGGTTTTTAACAAACACTACCTAACAGGAAAAccgttagcattagcatcagcATTTAATAACAGTCTAGAAAAGTACACAAGTGTGTGAACTGAGGCACGACGTTAGTGTGTTCAGTCAGTTGGGGACACggtgtcacatggtgctatacttcctctctctctctctctctctctctctctctctctctctcacctcttccAGTGCTCCAGTGGACAACCTGTGGCCTGCCacattgatgacatcatcagagcGTGACATAATGTATACAAACCCCTCCTCGTCGACGTATCCAGCATCCATAGTGTCATAGTAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU327175 True 1124 TUCP 0.45 2 3536997 3538743

Neighbor

gene id symbol gene type direction distance location
pawr pawr coding downstream 290001 3205288 ~ 3246996 (-)
LOC117599441 LOC108261611 coding downstream 858965 2672021 ~ 2678032 (-)
LOC117599440 LOC108261400,LOC108279477,LOC108262466,LOC108261384,LOC108261705,LOC108261423,LOC108261555,LOC108261611,LOC108261687 coding downstream 867661 2668355 ~ 2669336 (-)
LOC117599439 LOC108261384,LOC108279477,LOC108261932,LOC108261705,LOC108261610,LOC108261515,LOC108261687,LOC108261554,LOC108262337 coding downstream 869482 2664397 ~ 2667515 (-)
LOC117599438 NA coding downstream 906669 2628665 ~ 2630328 (-)
ppfia2 ppfia2,LOC107680027,LOC107694182 coding upstream 6333 3545076 ~ 3691686 (-)
hcls1 LOC108279643,LOC107095911,LOC105918344,LOC103358095,LOC102201149,LOC102292035,LOC101481917 coding upstream 200141 3738884 ~ 3755857 (-)
orc5 orc5 coding upstream 259598 3798341 ~ 3811616 (-)
kmt2e kmt2e coding upstream 318772 3857515 ~ 3906653 (-)
kdm7aa kdm7a coding upstream 380559 3919302 ~ 3945301 (-)
G276049 NA non-coding downstream 121857 3414868 ~ 3415140 (-)
G276038 NA non-coding downstream 163979 3372624 ~ 3373018 (-)
LOC113523901 NA non-coding downstream 180564 3355454 ~ 3356433 (-)
G276021 NA non-coding downstream 315793 3217719 ~ 3221204 (-)
LOC117599595 NA non-coding upstream 26292 3565035 ~ 3571926 (-)
G276153 NA non-coding upstream 101224 3639967 ~ 3640783 (-)
G276342 lhfpl3 non-coding upstream 263650 3802393 ~ 3815365 (-)
G276353 NA non-coding upstream 273797 3812540 ~ 3813351 (-)
G276384 NA non-coding upstream 362519 3901262 ~ 3904931 (-)
lin7a lin7a other downstream 42981 3430190 ~ 3494016 (-)
rps16 rps16 other downstream 152074 3299257 ~ 3384923 (-)
ppp1r12a ppp1r12a,LOC107694147,LOC106609419 other downstream 201980 3226595 ~ 3335017 (-)
G275981 NA other downstream 335700 3142534 ~ 3201297 (-)
G275484 LOC108261400,LOC108261705,LOC108279477,LOC108261423,LOC108261611,LOC108262118,LOC108261384,LOC108262466,LOC108261687,LOC108261555 other downstream 1425049 2089064 ~ 2111948 (-)
G276340 NA other upstream 197387 3736130 ~ 3737077 (-)
golgb1 LOC108279640 other upstream 220468 3759211 ~ 3829402 (-)
G276421 NA other upstream 543535 4082278 ~ 4091863 (-)
G276530 slc35e3,LOC107556774,LOC107710682 other upstream 759117 4297860 ~ 4300524 (-)
LOC113523868 NA other upstream 792517 4331260 ~ 4343545 (-)

Expression


Co-expression Network