G276384


Basic Information

Item Value
gene id G276384
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 3901262 ~ 3904931 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU327616
gctatctatctatccatctctctctctctctctctctctgttttttaacAAAGCTGAACTCCTGGTTGTAAGTCTGTGTGATGAGTAATGAGAGTGTaggatacagagagagagagagagagagagagaagagagggaaagagggagtgtgagtgtgttttaagGTTTAATTCCTGAAATTAGATGTAATTTGGACCATCTGAGCTCCAACAGCagccttttttccctcttcagcAGGCTGTTTTTATTACAAACTGCACTTgtgaagctttttttaaaatatatatttatatcctaATATGAACCGTGACATAATGCATCTTATTATAATCTTAATCTTATAAATATTAAAGCTCTAAGCtccactgttattattattattattattatctcgaGATCTCGTATTTCTGATAtaacttgtctttttttttttattaattttgcaaATCTTAGAGGGGAAAATATTACAGTCCATCCAGGATGACTGATCAGAGCTTTACACTGTcgctgtaatttaatttaattcaataaataaacattaaaatctgaataaaatccCAAATCATCATCTCTGCACTTCATCCCCTTCAACTGCGCAAACTGctgtatttcttatttttaaccatttaaatcctcactgctgacacagtttacacaaaattatacaaaacTACACCTTTATAAAtctaaatgaactaaaatattacaatataaaccGCTTTAAAAACGTTTTATTCGCCTTTTTCTTTCAGGCGCACGAGCGTAATTCAATCCGCGTACGTATTAACGTTAGCATGTTAGCTTGTTAGCATGAAGCTATTAACTAGCCATATTATTATCTGGACCTCAGGCAGATTTAAACCGCTCACTCGTTAGAAATATGAGTTAGTACAGTAGCATAAGTAACATATCGATATttttatgaaggaaaaaaaagttactttcgagaaaaaaataaaaataaaacggTTAGCttgctaaccagctagctagcatgttcgtgttttttttttttttttttttttttttttttttttttaaacaacgaGTTCAAAAGGTAAATAAAA
>TU327618
tgatgatgatgatgataaggaACGAGGAAGAATCTTGTTTAGCGTTGAGGTTTGAGAGAAATTTCCCTACAAATCCGCTCCAGGTTCTCGTTTCTGACTCCAAACTCGTCCTGCTATGAAATACGACGTTTCGCCTCGGACTGTCCGATTTCTGTCCGAGGTTTTTAGTAAATAAATCAGACCTTGTTTTgaattcaaaatgtttttggagTGCGAGAGGAAGGAGCGCCGcaatactgaaataaaatgcGGTATGCGATAACTTGTTATATAATGCGATATGCGGTGCGATAGTGGTATAAGTgcgtaaaatcaatttaaaatatatttatatgtctgtttatatatttaaaaactgaaaatgacataacgaACATACACGTTTTATGTTGTTTtgaagaaaagaaagcattctctgctctCTGTGTCGCattaaaactttgacttttcgtaACTTTCTGAAGTATTAAActcattcagttatcgcaagTCCTCGCCATATGCATATcacgatatttacatttgcgatGTTTCAataattttgatatattgtgcagcactaatacacaaaacacacacacacaagtgcaaaaacctcaatttaaataataaaccaatcACAAActtcttttcactgtttttttcttctcctgatAGTGTTGTTGATGTTAATTGTTTGTCGATTGTCCTAATCGTCCGAAACCGAATCAGATCGGACTTTCGGTTTGTTTGCTGTGCGATATGATACGACACGATAATGCCGTAAGTgcgtaaaatcaatttaaattatatttatatatgtgtttatatatttaaaaactgaaaatgatataaacaagataagaaacaagaaaagaaagcgttctctctgctctctgcttCGCCCTAAAACGTTCAGTTTTTTCGTaaatttttgaaatattaaactCACTCAGTTATCTCAAGCTCTTTCCGTTTGCATATCACAATATTTCGATTATttcaatcattttattatattgtgcaGCTCTGAGGATTTTTACGCTTTTGCTGGTGTCTTGGCCCGGAGAAGAATACGACAAAACCACCGTCAGTTTGACTCTGGCTTAGCGCCGAAttgcagaaaatgaaatattcactTCGCGGATCCACTAAACGTTTTTATTCAGTATGAAACCCCGTGATTTTATACTTTGAAAAGTGCGTAACTCTTCCGCAGTCTAAAATCGTAAGTAGATCCGTTAGACCCGTGTGTATGGGCATGGATATCGCAGTCAGACACAATGGGCTAACAATTTgtctagttatttatttatttattgttttttaaaattcattctgGAGGAATATTGTATGAGGCACATTGATCAATTCTTCCTCCAATAAAAGATATTGAAATATGACGTTTAGCCGAACCACAGGCTCGGCTTCTGGCGAGATAGATTTTCTCCTGTCCGAGTTATATAAAGCCATAAATATGTGGCACTTTGTGGAAAGAACAATAGAGGGATTTATTGCGGCCTCCGTCGCTTTGCCCTCTCTCATGCTTTGTCATCCAGCACGGAGTGAAATAAAATCCAGAACcgtctgcctttttttttttttttaaacaacgaGTTCAAAAGGTAAATAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU327616 False 1067 lncRNA 0.32 2 3901262 3904931
TU327618 True 1614 lncRNA 0.36 2 3901262 3902898

Neighbor

gene id symbol gene type direction distance location
orc5 orc5 coding downstream 89646 3798341 ~ 3811616 (-)
hcls1 LOC108279643,LOC107095911,LOC105918344,LOC103358095,LOC102201149,LOC102292035,LOC101481917 coding downstream 145405 3738884 ~ 3755857 (-)
ppfia2 ppfia2,LOC107680027,LOC107694182 coding downstream 209576 3545076 ~ 3691686 (-)
pawr pawr coding downstream 654266 3205288 ~ 3246996 (-)
LOC117599441 LOC108261611 coding downstream 1223230 2672021 ~ 2678032 (-)
kdm7aa kdm7a coding upstream 14371 3919302 ~ 3945301 (-)
cd36 cd36 coding upstream 139775 4044706 ~ 4060514 (-)
psmc2 psmc2,LOC103382982 coding upstream 879197 4784128 ~ 4792797 (-)
gys2 gys2,LOC107659841,LOC107694689 coding upstream 992339 4897270 ~ 4917780 (-)
ldhba ldhb,ldhba,LOC107659842,LOC107589975,LOC107725606,LOC107586539,LOC107744904,LOC107694687 coding upstream 1020785 4925716 ~ 4938813 (-)
G276342 lhfpl3 non-coding downstream 85897 3802393 ~ 3815365 (-)
G276353 NA non-coding downstream 87911 3812540 ~ 3813351 (-)
G276153 NA non-coding downstream 260479 3639967 ~ 3640783 (-)
LOC117599595 NA non-coding downstream 329336 3565035 ~ 3571926 (-)
G276049 NA non-coding downstream 486122 3414868 ~ 3415140 (-)
G276387 NA non-coding upstream 8608 3913539 ~ 3913989 (-)
G276388 NA non-coding upstream 10397 3915328 ~ 3916117 (-)
G276395 NA non-coding upstream 63764 3968695 ~ 4042521 (-)
G276420 NA non-coding upstream 165517 4070448 ~ 4142948 (-)
G276447 NA non-coding upstream 219534 4124465 ~ 4125581 (-)
golgb1 LOC108279640 other downstream 71860 3759211 ~ 3829402 (-)
G276340 NA other downstream 164185 3736130 ~ 3737077 (-)
G276075 NA other downstream 362519 3536997 ~ 3538743 (-)
lin7a lin7a other downstream 407246 3430190 ~ 3494016 (-)
rps16 rps16 other downstream 516339 3299257 ~ 3384923 (-)
G276421 NA other upstream 177347 4082278 ~ 4091863 (-)
G276530 slc35e3,LOC107556774,LOC107710682 other upstream 392929 4297860 ~ 4300524 (-)
LOC113523868 NA other upstream 426329 4331260 ~ 4343545 (-)
LOC117599555 LOC108279645 other upstream 452608 4357539 ~ 4457121 (-)
G276503 LOC108279645 other upstream 453694 4358625 ~ 4587096 (-)

Expression


Co-expression Network