G276388


Basic Information

Item Value
gene id G276388
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 3915328 ~ 3916117 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU327627
TGGCAAAGTGGTGCATGATGGGATTTCTGTACAGCGTTACGGACGCTGACCCTCGCTGGTGCATGATGGGATTTCATCAGCGCTCTGGATTCTGTTTGTTAACATTTTTCAGCGTctattttgttaaaatgaaacaataaaagtCCACAGGAGAAGCGACTCGTCcactgtttgtttctttttattttctttttttaaatagacgTGTAAATCAGACTAAACGAGTCTCTGTACAGCAGGAAGTCAGGACGAGTTTAACACCAGTGcgggttacacacacacacacacacacacacacacacactccactcactccactcactcCACTCAGCACCTGGAGAGAAAATAAGCAGGAAGAAAAGGGACAAAAAAGATAAATGTTTAGATTCAGTGCTATATAcaacttctacacacacacacactcactcacacacacacgcacacacactcactggtgTGTCTGATGATGTCACTCGTCATCAGGAGGAATTCCCAGCTCCTGGTCGGTCCAGGCGTCTGTGTCCGGCCACGGAAAATGACCCTGAGGGAAGAAAACACAGTTTATactcagtactgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgagagactcaCGAGCACGGCGTCTGAATCGTGCCAGAAGTGCCACAGGATCCAGAACCACATGAAGCCGCTGAGCAGCTCGGAGCGAAACTTCTGGTGTTTAGTGATCTGAGGAGGCTGACGGTACTGAGCCACGATGTGTGGAGCTCCACCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU327627 True 764 lncRNA 0.48 2 3915328 3916117

Neighbor

gene id symbol gene type direction distance location
kmt2e kmt2e coding downstream 8675 3857515 ~ 3906653 (-)
orc5 orc5 coding downstream 103712 3798341 ~ 3811616 (-)
hcls1 LOC108279643,LOC107095911,LOC105918344,LOC103358095,LOC102201149,LOC102292035,LOC101481917 coding downstream 159471 3738884 ~ 3755857 (-)
ppfia2 ppfia2,LOC107680027,LOC107694182 coding downstream 223642 3545076 ~ 3691686 (-)
pawr pawr coding downstream 668332 3205288 ~ 3246996 (-)
kdm7aa kdm7a coding upstream 3185 3919302 ~ 3945301 (-)
cd36 cd36 coding upstream 128589 4044706 ~ 4060514 (-)
psmc2 psmc2,LOC103382982 coding upstream 868011 4784128 ~ 4792797 (-)
gys2 gys2,LOC107659841,LOC107694689 coding upstream 981153 4897270 ~ 4917780 (-)
ldhba ldhb,ldhba,LOC107659842,LOC107589975,LOC107725606,LOC107586539,LOC107744904,LOC107694687 coding upstream 1009599 4925716 ~ 4938813 (-)
G276387 NA non-coding downstream 1339 3913539 ~ 3913989 (-)
G276384 NA non-coding downstream 10397 3901262 ~ 3904931 (-)
G276342 lhfpl3 non-coding downstream 99963 3802393 ~ 3815365 (-)
G276353 NA non-coding downstream 101977 3812540 ~ 3813351 (-)
G276153 NA non-coding downstream 274545 3639967 ~ 3640783 (-)
G276395 NA non-coding upstream 52578 3968695 ~ 4042521 (-)
G276420 NA non-coding upstream 154331 4070448 ~ 4142948 (-)
G276447 NA non-coding upstream 208348 4124465 ~ 4125581 (-)
G276497 NA non-coding upstream 339083 4255200 ~ 4255944 (-)
G276515 NA non-coding upstream 361942 4278059 ~ 4322681 (-)
golgb1 LOC108279640 other downstream 85926 3759211 ~ 3829402 (-)
G276340 NA other downstream 178251 3736130 ~ 3737077 (-)
G276075 NA other downstream 376585 3536997 ~ 3538743 (-)
lin7a lin7a other downstream 421312 3430190 ~ 3494016 (-)
rps16 rps16 other downstream 530405 3299257 ~ 3384923 (-)
G276421 NA other upstream 166161 4082278 ~ 4091863 (-)
G276530 slc35e3,LOC107556774,LOC107710682 other upstream 381743 4297860 ~ 4300524 (-)
LOC113523868 NA other upstream 415143 4331260 ~ 4343545 (-)
LOC117599555 LOC108279645 other upstream 441422 4357539 ~ 4457121 (-)
G276503 LOC108279645 other upstream 442508 4358625 ~ 4587096 (-)

Expression


Co-expression Network