G276420


Basic Information

Item Value
gene id G276420
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4070448 ~ 4142948 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU327671
gtgtctattaagaacagtgtaacagtgtgtgtgtgtgtgtgtgtgtgtgtctcacccagcagcagcagtttaACCTCGCGCGCTGCTTTCTCTCCATCATCCCGCAGGTTCCGGTCTATTCTGCGGCTCCTCTCCACCGCCGCCTTGTCCTCTGTGCTCAGCGTGCAGCCCatcctccctcacacactctcacacactctcactcacactcacacacacactatccaccATGCAAGGCTTCTTCTCCccgacacacactctctctcactcactctctctctctcacacacacacacacacacacacacacgcccttgTCTGAATGCAAACGGCTGGGCGTTGAAACGGCGCGGTTTAACGCGGGTTTGACTCGGTCCAGCAGTGCGGGCTGTAATCCGGCTACACGGTAAACCGTGTGAACTCCTCAAACCGGGTAAAACACGgctaaaagaggaaaagagtaCAAGTGGATCCCCAAACGCCTAACTGTTCCTCCATCCGCCCGCTTTCTGCTTT
>TU327672
acacactctctctctctctctctctctctctctctcacacacacacacacacacacactctctctctctctctctctcacacacacactctctctctctctctctctctctctctctctctctcacacactcacacacacacacacacacacacacgcccttgTCTGAATGCAAACGGCTGGGCGTTGAAACGGCGCGGTTTAACGCGGGTTTGACTCGGTCCAGCAGTGCGGGCTGTAATCCGGCTACACGGTAAACCGTGTGAACTCCTCAAACCGGGTAAAACACGgctaaaagaggaaaagagtaCAAGTGGATCCCCAAACGCCTAACTGTTCCTCCATCCGCCCGCTTTCTGCTTT
>TU327676
acacactctctctctctctctctctctctctctctcacacacacacactctctctctctctctctctctctcacacacacactctctctctctctctctctctctctctctctctctcacacactcacacacacacacacgcccttgTCTGAATGCAAACGGCTGGGCGTTGAAACGGCGCGGTTTAACGCGGGTTTGACTCGGTCCAGCAGTGCGGGCTGTAATCCGGCTACACGGTAAACCGTGTGAACTCCTCAAACCGGGTAAAACACGgctaaaagaggaaaagagtaCAAGTGGATCCCCAAACGCCTAACTGTTCCTCCATCCGCCCGCTTTCTGCTTT
>TU327678
tctctctctctctctctctctctctctctcacacacacacacacacacacacacacacacacgcccttgTCTGAATGCAAACGGCTGGGCGTTGAAACGGCGCGGTTTAACGCGGGTTTGACTCGGTCCAGCAGTGCGGGCTGTAATCCGGCTACACGGTAAACCGTGTGAACTCCTCAAACCGGGTAAAACACGgctaaaagaggaaaagagtaCAAGTGGATCCCCAAACGCCTAACTGTTCCTCCATCCGCCCGCTTTCTGCTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU327671 True 516 lncRNA 0.54 2 4070448 4071037
TU327672 False 362 lncRNA 0.52 3 4070448 4142948
TU327676 False 346 lncRNA 0.53 3 4070448 4142948
TU327678 False 268 lncRNA 0.53 2 4070448 4142226

Neighbor

gene id symbol gene type direction distance location
cd36 cd36 coding downstream 9934 4044706 ~ 4060514 (-)
kdm7aa kdm7a coding downstream 125147 3919302 ~ 3945301 (-)
kmt2e kmt2e coding downstream 163795 3857515 ~ 3906653 (-)
orc5 orc5 coding downstream 258832 3798341 ~ 3811616 (-)
hcls1 LOC108279643,LOC107095911,LOC105918344,LOC103358095,LOC102201149,LOC102292035,LOC101481917 coding downstream 314591 3738884 ~ 3755857 (-)
psmc2 psmc2,LOC103382982 coding upstream 641180 4784128 ~ 4792797 (-)
gys2 gys2,LOC107659841,LOC107694689 coding upstream 754322 4897270 ~ 4917780 (-)
ldhba ldhb,ldhba,LOC107659842,LOC107589975,LOC107725606,LOC107586539,LOC107744904,LOC107694687 coding upstream 782768 4925716 ~ 4938813 (-)
slc25a3a slc25a3a,slc25a3,LOC108279629,LOC108437945,LOC107732290 coding upstream 811343 4954291 ~ 4965093 (-)
strap strap,LOC107744907,LOC107586834,LOC107725662,LOC107694684 coding upstream 845533 4988481 ~ 5003791 (-)
G276395 NA non-coding downstream 27927 3968695 ~ 4042521 (-)
G276388 NA non-coding downstream 154331 3915328 ~ 3916117 (-)
G276387 NA non-coding downstream 156459 3913539 ~ 3913989 (-)
G276384 NA non-coding downstream 165517 3901262 ~ 3904931 (-)
G276342 lhfpl3 non-coding downstream 255083 3802393 ~ 3815365 (-)
G276497 NA non-coding upstream 112252 4255200 ~ 4255944 (-)
G276515 NA non-coding upstream 135111 4278059 ~ 4322681 (-)
G276538 NA non-coding upstream 165640 4308588 ~ 4309037 (-)
LOC117599554 LOC108279645 non-coding upstream 243394 4386342 ~ 4387104 (-)
LOC117599550 LOC108279645 non-coding upstream 256333 4399281 ~ 4399935 (-)
golgb1 LOC108279640 other downstream 241046 3759211 ~ 3829402 (-)
G276340 NA other downstream 333371 3736130 ~ 3737077 (-)
G276075 NA other downstream 531705 3536997 ~ 3538743 (-)
lin7a lin7a other downstream 576432 3430190 ~ 3494016 (-)
rps16 rps16 other downstream 685525 3299257 ~ 3384923 (-)
G276530 slc35e3,LOC107556774,LOC107710682 other upstream 154912 4297860 ~ 4300524 (-)
LOC113523868 NA other upstream 188312 4331260 ~ 4343545 (-)
LOC117599555 LOC108279645 other upstream 214591 4357539 ~ 4457121 (-)
G276503 LOC108279645 other upstream 215677 4358625 ~ 4587096 (-)
LOC117599551 LOC108279645 other upstream 218384 4361332 ~ 4361942 (-)

Expression


Co-expression Network