G276447


Basic Information

Item Value
gene id G276447
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4124465 ~ 4125581 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU327710
CGGAATCGACTCCCTGCACCCTGCATTACAGAGCACAGTTCTGCTCAGGTTGGAGCTCACCTGTTCTGACGCACTTGAGGCGGACGGGGTCTTTGCAGTGCTTTAACACCGCCAGCACGTCTCTGGTGGTCAGTCCGGCCACCGGGGTGTCGTTCACCTCCAGCAGAAGTTCTCCCCGAGTCTGTCCCTCTGGAGCTGGACTTATCCCCTCCACAGCCCCGAGCATGGGGAACTGGCCGAGCTCTGCGCCTCCTCTGACATCCACACGGAGCTCGCTGTGTTTATCCCGGGTTAACACCACTTCATGGACTCTGCTGCTCCAGTGGCTTCTCTTCTTCCACGTCTTGGACATGTCTGGACTTTAGTTTTTCACATGAGGGCGGTCTGTGTGGTTAAAAGTTCTCAGAAACTCCTGGTTTTCCAGCTTAAACTCCAGGAAAACGACTTCAGATGTCTGGAGGATCCATGTCGGACGTCCTAGTTAGatcccagcacacacacacacacacacacacacacacacaaatgctgaTAGAAAGTTTTTGTCCTGTGTTAAATCCCAGACACACCCTCCTCCAGCACTAATGAGAACctaacagctgtaaacagctgTAAACGGGACCCCTCCTGATGTCTGCATCCACACAACCtgagttttgcttttttttgtggcAGAAATCACGGGCTCCGCTGCTCCACAGGAGGTTTATTGCTCTtcttcaagcttttttttttttgtggacatATTTACAgctacactgacacacacaggatgCGATTAGAGCGACCGGAAGTCATTCATTTCCAGAGAAGAGCTGCAGATTTATACAGGAACCGGAGGCGAAGTGACCGCTAGTGAagagaagtgggcgtggcctaaggGGCAGAGGTTTTAACGTCATGTAAATGAACAGCGATGCGCGTGGGCGGGGactttatgcaaatgagcaaatgggCGGGGCCGCGACATTTAataagaagaagcagaagcagaagaagaactttttaacacttaaatattttaaatttcataaaattattttcc

Function

GO:

id name namespace
GO:0007050 cell cycle arrest biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU327710 True 1045 lncRNA 0.50 2 4124465 4125581

Neighbor

gene id symbol gene type direction distance location
cd36 cd36 coding downstream 63951 4044706 ~ 4060514 (-)
kdm7aa kdm7a coding downstream 179164 3919302 ~ 3945301 (-)
kmt2e kmt2e coding downstream 217812 3857515 ~ 3906653 (-)
orc5 orc5 coding downstream 312849 3798341 ~ 3811616 (-)
hcls1 LOC108279643,LOC107095911,LOC105918344,LOC103358095,LOC102201149,LOC102292035,LOC101481917 coding downstream 368608 3738884 ~ 3755857 (-)
psmc2 psmc2,LOC103382982 coding upstream 658547 4784128 ~ 4792797 (-)
gys2 gys2,LOC107659841,LOC107694689 coding upstream 771689 4897270 ~ 4917780 (-)
ldhba ldhb,ldhba,LOC107659842,LOC107589975,LOC107725606,LOC107586539,LOC107744904,LOC107694687 coding upstream 800135 4925716 ~ 4938813 (-)
slc25a3a slc25a3a,slc25a3,LOC108279629,LOC108437945,LOC107732290 coding upstream 828710 4954291 ~ 4965093 (-)
strap strap,LOC107744907,LOC107586834,LOC107725662,LOC107694684 coding upstream 862900 4988481 ~ 5003791 (-)
G276395 NA non-coding downstream 81944 3968695 ~ 4042521 (-)
G276388 NA non-coding downstream 208348 3915328 ~ 3916117 (-)
G276387 NA non-coding downstream 210476 3913539 ~ 3913989 (-)
G276384 NA non-coding downstream 219534 3901262 ~ 3904931 (-)
G276353 NA non-coding downstream 311114 3812540 ~ 3813351 (-)
G276497 NA non-coding upstream 129619 4255200 ~ 4255944 (-)
G276515 NA non-coding upstream 152478 4278059 ~ 4322681 (-)
G276538 NA non-coding upstream 183007 4308588 ~ 4309037 (-)
LOC117599554 LOC108279645 non-coding upstream 260761 4386342 ~ 4387104 (-)
LOC117599550 LOC108279645 non-coding upstream 273700 4399281 ~ 4399935 (-)
G276421 NA other downstream 32602 4082278 ~ 4091863 (-)
golgb1 LOC108279640 other downstream 295063 3759211 ~ 3829402 (-)
G276340 NA other downstream 387388 3736130 ~ 3737077 (-)
G276075 NA other downstream 585722 3536997 ~ 3538743 (-)
lin7a lin7a other downstream 630449 3430190 ~ 3494016 (-)
G276530 slc35e3,LOC107556774,LOC107710682 other upstream 172279 4297860 ~ 4300524 (-)
LOC113523868 NA other upstream 205679 4331260 ~ 4343545 (-)
LOC117599555 LOC108279645 other upstream 231958 4357539 ~ 4457121 (-)
G276503 LOC108279645 other upstream 233044 4358625 ~ 4587096 (-)
LOC117599551 LOC108279645 other upstream 235751 4361332 ~ 4361942 (-)

Expression


Co-expression Network