G276503 (LOC108279645)


Basic Information

Item Value
gene id G276503
gene name LOC108279645
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4358625 ~ 4587096 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU327783
aggatccagaggtcaggtgactgtgactcaGACTCCTTCAGTGCAAACTGTTGTTCCAGGAAACACAGTCACCATCAACTGTAGAACCAGTAGCAGTGTGTATAGTGGTAACTACCTAGCCTGGTACCtgcagaaacctggagaagTTCCTAAACTCCTCATCTATGCTGCTACTAGCTTACAGTCAGGGACTCCAGCTCGTTTCAGAGGCAGTGGATCTAATACTGActtcactctgaccatcagtggagtccagactgaagatgcaggagattactactgtcagagtttaCATCAGATCAGTAGTAGCTAtgtgttcacacagtgttagagcGTGGTACAAAAACCTCGGTCAGTGAGAGTGCACAGAGaagcactgctgcagctgggagcgactgcaggtgctgagggggaggatgtgatacagcacaatgacacacactgtggacgAGAGAAAACACACCGCACTAACtcactaatgcacacacacacatctgtgagAGGAGTCCACCTTTCTCAGCTGTGGACATACAAACAATTCCTGATCATTCTGATTAACTGCTTAGTAATTATCTTTAtcccattttaaataattaagaaagtatttattatatatttttatatttattttgctgaaTATATGCTTTACCAAAAGAGTTTTTTATATtagtttaaataatttttacatgcattttcattttactttatattattattattattattattattattattattatattagagttaatattttactataataactttaataatcattaaatagAGCCACATTACAGAGCTGAGACTGACATTTAACTGaaaatttctttaattattaacaaacCATTAGATAATGATTAATTCAGTCTAGCATGTTCAAATCAGTATAAACCAGagaattatttaaaagcatgacaaaattaatttataagTTAATATACTAAACTTAAAATTTCTAAAAgctataaaatgtaatacagaaattaataaatgcaaTTGCTTTTTCCACCTTAATAATCCATATTTAAagagtgtttttaaaattaattcaataatCTCAATTATGCAGCGTGGAAATTGAGTTATACAGGAGTTTGTGTGAAATCTCGATGATTCTTTATTTGTAACAAGTTGGATGTTTTTGATTAGAACTCTGTAAGACActaggttttatttttacattaattattaataccAATGTTTTGCAGTTTCATGACTTTATTGCAGTGTGAAATGTCAAACCCTTCTATGGTTTTCTGtataggatgttcaaaaacaCTGCAACATCAGCAGGACCGTCAACATCCTGAGCACTACAACAACGCAGAAGGTCTGATGAGTCCTGCCTGTTCCTGACCAGTCCCAAACTGCACCTGCTCAAAGTATCTCCAATCTCGCCCACTTCTGCAGAATGTTTGACTAATCCCACCCAATCCCACATAATTTTTCACACTGGTTCAAATGCTTTTGGAAAAGCTAGAGATGGATCAGGTTAAGGCTGTATATTTTACTGCAGAAGAACAAGAATTcaagataaataataacagcaaaaagcAATACTGTCACTGCTGCCAAGGTGAGTGGCAAAAAATAGCTGACTGTGTAAATGCATAAGTTGTAatagatcattttatttaaattcacatGGCACTTGATGTAAAAGTAatcacaaatgaaataattagcaataaattattagtaattattaatCTTTTAAGTTGAAATCCAAACAGTGTTAGGTGATCTTGGCAGCAGAAAAgaccaaatataaaaatattatacaaagtGGTAAGTAGGCCACTTGTCTAAAAGTTGATGTCGTTACTCTCTTCATTGTCTGATTGCTTTGCCTCTGACAAAGTGCTCTGATGATATTTTTACAGCTAATaggagaaagaatgaaaaaataaaaccctgcCGGTGGTCCTCCACCTCCAGATTATACACTGGCTGAAGAATTGGCCCTTTAATGGAGGACCATAGCTCTGAAATACCTCTTCTGACCCAGGTGGCTCCAGCATATCAAAGTCTTTTGTAGATGTTGAGTAAAAGTggactaaaataaaatgtaattgaaatAGATGTGTAAGCATTAATAAGCTGTGTGTTTCCTCTTTGTTCAATAAGACTGCTAGAGCCTGGCAGCACTTCACATGAGGTGATTATTGTGTACTGGGCACAAGTGACTTTAGTGTATTCAATACATTAATTGTAGCCGATTTTGAACATAATCCTGATATACAGATGATCTCTGTGTGCTCTGAGAGGTCTTTGGGAGTAAACTCACTCactgatttcatattaaattacCACAGTGGTCTACACAAAGTCTTGTATGTTCAAATTTATCTACTAGCAATATGTTTTCCTGCTTAATCCACGGGGTAACAGCCTTCCTCCCAACCTAGCACCTCCACCTGTAGGCATACCAGGGTGACCTCAGAGGtaaatcagtattttaaaaaaatctgaattatcCAACACTCTAACACGTCCAAGGTGTGGGGTTTTTAACGTAAGGGTGCTGTAGAAAAGAAATGCAGAATGGACACtagcatttcagaaaaaaaaaaattcagagcaAAACCATATACAGTAATGTAGTCAGCATTCATACCAAGCTCTACATGGTGATATGCTGTACACTCCCTGAGAATACGAGTCATGAACTGACCCAGGCCATTTGCCTTAATGCTGGTAGTCAGAGACTGATCACAGGTCGTGTAAACAGGGGAAAAGGGCTTAATTAGTTCTATATTCATGTTCTGTTAAATCCCAGTTACTACTAGATATTTCAGGAAGTGTGAAAATTAATAGTCTACCTGAACACTGATGCTATGCACTGACTTGCTTTTAATATAGTCAGATTCCTGCACTCACAGGGATGCTCTAATAGtgatgtgtgtgcagtgtaatgCAGTGATTACTCTGAGAAATCCTAATAGTCTACAGACACGTTATAAAACATATAACACCTTAACCATCAATATTCTGTTAATTCAGTTACCTgccattaaataataaaaaaaaaactataataatgtTTGAAATCTGGGATCCAGGGCTTGTTTGGAGTATTTTGCTATAATTTCACAAAATTAGGAATACTCTGTATCTGTGGGATTGTCATCCTAG
>TU327788
cagcaacttcacccacagcaaccatgactttgatcagcgtcttcatctgcacactggcccTCTGGACTCAAGATGAGACTTTAACATCAACTCACGgcctcacacacttcattttataCTAATTCTACACCactttacagcatacaaacacaatctatgtttctcttcaggatccagaggtcaggtgactgtgactcaGACTCCTTCAGTGCAAACTGTTGTTCCAGGAAACACAGTCACCATCAACTGTAGAACCAGTAGCAGTGTGAATAATGGTAACTACCTAGCCTGGTACCtgcagaaacctggagaagctcctaaactcctgatctaCAGTGCTACTAGCTTACAGTCAGGGACtccagctcgtttcagtggcagtggatctaATACTGActtcactctgaccatcagtggagtccaggctgaagatgcaggagattactactgtcagagtgaACATTATATCAGTAGTAGCTAtgtgttcacacagtgttagagcGTGGTACAAAAACCTCGGTCAGTGAGAGTGCACAGAGaagcactgctgcagctgggagcgactgcaggtgctgagggggaggatgtgatacagcacaatgacacacactgtggacgagagaaaacacaccac
>TU327793
tgGCAGCCCATGCTTCAGTGCTctgcgagtgtttatagccctgtgactttaacacttcatgactgagagctgctgctcagcaacttcacccacagcaaccatgactttgatcagcgtcttcatctgcacactggcccTCTGGACTCAAGgatccagaggtcaggtgactgtgactcaGACTCCTTCAGCGCAAACTGTTGTTCCAGGAAACACAGTCACCATCAACTGTAGAACCAGTAGCAGGGTGTATAGTGGTAACAGCCTACACTGGTACCtgcagaaacctggagaagTTCCTAATCTCCTGATCTATGATGCTACTAGCTTATATTCAGGGACTCCAGCTCGTTTCAGAGGCAGTGGATCTGATACTGACTTCACTCTaaccatcagtggagtccagactgaagatgcaggagattactactgtcagagttaccATTATATCAGTAGTAGAAATGagttca
>TU327794
cacacacacacacaaacacacacactttgcattgGCAGCCCATGCTTCAGTGCTctgcgagtgtttatagccctctgactttaacacttcatgactgagagctgctgctcagcaacttcacccacagcaaccatgactttgatcagcgtcttcatctgcacactggcccTCTGGACTCAAGgatccagaggtcaggtgactgtgactcaGACTCCTTCAGTGCAAACTGTTGTTCCAGGAAACACAGTCACCATCAACTGCAGAACCAGTAGCAGAGTGGAGAGTGGTAACTGTCTCGCCTGGTACCtgcagaaacctggagaagctcctaaactcctgatctaCAGGGCTACTAGCTTACAGTCAGGAACTCCAGCTCGTTTCAGAGGCAGTGGATCTAATACTGActtcactctgaccatcagtggagtccagactgaagatgcaggagattactactgtcagagtgaACATTATATCAGTAGTAGCTAtgtgttcac
>TU327795
cacacacacacacaaacacacacactttgcattgGCAGCCCATGCTTCAGTGCTctgcgagtgtttatagccctctgactttaacacttcatgactgagagctgctgctcagcaacttcacccacagcaaccatgactttgatcagcgtcttcatctgcacactggcccTCTGGACTCAAGgatccagaggtcaggtgactgtgactcaGACTCCTTCAGTGCAAACTGTTGTTCCAGGAAACACAGTCACCATCAACTGCAGAACCAGTAGCAGAGTGGAGAGTGGTAACTGTCTCGCCTGGTACCtgcagaaacctggagaagctcctaaactcctgatctaTAAGGCTACTACCTTACAGTCAGGGACtccagctcgtttcagtggcagtggatctaATACTGActtcactctgaccatcagtggagtccagactgaagatgcaggagattactactgtcagagtttcCATGAGATCAGTAGTAGCTATGTGTT
>TU327796
AGGGtccagaggtcaggtgactgtgactcaGACTCCTTCAGTGCAAACTGTTGTTCCAGGAAACACAGTCACCATCAACTGTAGAACCAGTAGCAGTGTGTATAATGGTAACTACCTAGCCTGGTACCtgcagaaacctggagaagctcctaaactcctgatctaCAGGGCTACTAGCTTACAGTCAGGGACTCCAGCTCGTTTCAGAGGCAGTGGATCTAATACTGActtcactctgaccatcagtggagtccagactgaagatgcaggagattactactgtcagagttaaCATTATATCAGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU327783 True 3141 lncRNA 0.36 3 4358625 4424542
TU327788 False 634 lncRNA 0.47 4 4399287 4555114
TU327793 False 467 TUCP 0.48 2 4538234 4545131
TU327794 False 500 TUCP 0.49 3 4500849 4587096
TU327795 False 497 TUCP 0.49 4 4477767 4587096
TU327796 False 306 lncRNA 0.47 3 4429498 4482994

Neighbor

gene id symbol gene type direction distance location
cd36 cd36 coding downstream 298111 4044706 ~ 4060514 (-)
kdm7aa kdm7a coding downstream 413324 3919302 ~ 3945301 (-)
kmt2e kmt2e coding downstream 451972 3857515 ~ 3906653 (-)
orc5 orc5 coding downstream 547009 3798341 ~ 3811616 (-)
hcls1 LOC108279643,LOC107095911,LOC105918344,LOC103358095,LOC102201149,LOC102292035,LOC101481917 coding downstream 602768 3738884 ~ 3755857 (-)
psmc2 psmc2,LOC103382982 coding upstream 197032 4784128 ~ 4792797 (-)
gys2 gys2,LOC107659841,LOC107694689 coding upstream 310174 4897270 ~ 4917780 (-)
ldhba ldhb,ldhba,LOC107659842,LOC107589975,LOC107725606,LOC107586539,LOC107744904,LOC107694687 coding upstream 338620 4925716 ~ 4938813 (-)
slc25a3a slc25a3a,slc25a3,LOC108279629,LOC108437945,LOC107732290 coding upstream 367195 4954291 ~ 4965093 (-)
strap strap,LOC107744907,LOC107586834,LOC107725662,LOC107694684 coding upstream 401385 4988481 ~ 5003791 (-)
G276515 NA non-coding downstream 35944 4278059 ~ 4322681 (-)
G276538 NA non-coding downstream 49588 4308588 ~ 4309037 (-)
G276497 NA non-coding downstream 102681 4255200 ~ 4255944 (-)
G276420 NA non-coding downstream 215677 4070448 ~ 4142948 (-)
G276447 NA non-coding downstream 233044 4124465 ~ 4125581 (-)
G276749 NA non-coding upstream 211563 4798659 ~ 4799157 (-)
G276755 prdm4 non-coding upstream 214811 4801907 ~ 4844371 (-)
G276761 NA non-coding upstream 230012 4817108 ~ 4876792 (-)
G276753 NA non-coding upstream 293322 4880418 ~ 4881008 (-)
LOC113531850 NA non-coding upstream 356453 4943549 ~ 4945278 (-)
LOC113523868 NA other downstream 15080 4331260 ~ 4343545 (-)
G276530 slc35e3,LOC107556774,LOC107710682 other downstream 58101 4297860 ~ 4300524 (-)
G276421 NA other downstream 266762 4082278 ~ 4091863 (-)
golgb1 LOC108279640 other downstream 529223 3759211 ~ 3829402 (-)
G276340 NA other downstream 621548 3736130 ~ 3737077 (-)
G276650 LOC108279602 other upstream 147835 4734931 ~ 4738999 (-)
tmpoa LOC108279628 other upstream 379136 4966232 ~ 4984315 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other upstream 1394042 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other upstream 1395196 5982292 ~ 5984564 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 2834892 7421988 ~ 7500079 (-)

Expression


Co-expression Network