G276515


Basic Information

Item Value
gene id G276515
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4278059 ~ 4322681 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU327822
TCGGATTCGTCTCGCTATTGCAGCATACCTGATTTGTGCAGAATTTAGAAAAATCTCAATTGAAGTTACTTCGTCGCTGAAATCGTGGCTCTGTGTTGTGCACGTACgtcaaaaattaataaatggcTCTTAATTTGTCGCTTGCTAGCATCAACGTAAGGCGTAACTTGGTGGAAGTTCTGTACCAGTATGAGGTAATCTCTGTGTATGAGGTCGTTCCTAAATCGTTTCTTTTAGCAGACGGAGAACACTTTGCTTCGAAACGTGATgaatgttggttttttttgttttgttttttaagatcTCTAATCAGTCTGGGAAGAAAAGAGTTAAATGTCTTTACCTCTGGCCCTCGTTCAGCGTCACTTAGAGCTCTACGTTCCCTAAATGTTGACTGAGACTctatgaaagaataaaaaaacagacagataataAATTActgaaactttaaataaaattctggattatgtttttaaaaaaaataaatcttataaaAAGAGGTCAGCAAAAAAAGGTAAGTGTTTGTACCTGGAATTTTCACTGCTATGAGATTTTTAGAAATCATTGCAAACAAAGCTCTGGAAAGACAAAGAACTCAAAAATAACATCCTGTACAACTTTCGTGTCTCATCCTGTAAAGATTTAGATGCAGATGTTCTAAAGGCAAACCCCGCTTCATGAACATTTACTCCAGAAGAGAGGACACATGCGATGGTTAACTCTGTGAAAGGTTTCACTTTCAGATGGATTAGAGAATAAGGACACCTGTCGCATCGTTAAAAAAAACCCCGCCCTACATTCCCAGAAGTCATGGCTTCTTTACACGGCTGTTTCAGCTGTTCAGCAGTTGGTGCATGTTTTTAATCAGATACACACCGTGGTTCTTTGACGGAGAAGCTGGCCACTCCGAGCACGGCACCGAGAGCGTCGTTTCCACAGTGCAcgatgtgctgctgctgcttgtcGTATAACTCCTTGCTCATGATGTACTTGCCCAGGTAGAACATAacctaaatcacacacacacacacacacacacacacacacacacacaaagtcgaTTAGAGCAACAAGAGTGACTACTGAACTGTCAGTGTGCTGGGTGACATGACAATACAATATCGAAACTGTGATACGTTATGtcacgatacacttttctgagatatcggtGGTATATACGTATTTTTATCACAAACAgctgctggattttttttttttttacatctttccttagtattcatttattttgtgatacaATGTAGAGTATCGTTAGAGAACCTACAGATCGTGATACAATGTAGAGTATCGTTAGAGAACCTACAGATCGTGATACAATGTAGAGTATCGTTAGAGAACCTACAGATCGTGATACAATGTAG
>TU327824
TCGGATTCGTCTCGCTATTGCAGCATACCTGATTTGTGCAGAATTTAGAAAAATCTCAATTGAAGTTACTTCGTCGCTGAAATCGTGGCTCTGTGTTGTGCACGTACgtcaaaaattaataaatggcTCTTAATTTGTCGCTTGCTAGCATCAACGTAAGGCGTAACTTGGTGGAAGTTCTGTACCAGTATGAGGTAATCTCTGTGTATGAGGTCGTTCCTAAATCGTTTCTTTTAGCAGACGGAGAACACTTTGCTTCGAAACGTGATgaatgttggttttttttgttttgttttttaagatcTCTAATCAGTCTGGGAAGAAAAGAGTTAAATGTCTTTACCTCTGGCCCTCGTTCAGCGTCACTTAGAGCTCTACGTTCCCTAAATGTTGACTGAGACTctatgaaagaataaaaaaacagacagataataAATTActgaaactttaaataaaattctggattatgtttttaaaaaaaataaatcttataaaAAGAGGTCAGCAAAAAAAGGTAAGTGTTTGTACCTGGAATTTTCACTGCTATGAGATTTTTAGAAATCATTGCAAACAAAGCTCTGGAAAGACAAAGAACTCAAAAATAACATCCTGTACAACTTTCGTGTCTCATCCTGTAAAGATTTAGATGCAGATGTTCTAAAGGCAAACCCCGCTTCATGAACATTTACTCCAGAAGAGAGGACACATGCGATGGTTAACTCTGTGAAAGGTTTCACTTTCAGATGGATTAGAGAATAAGGACACCTGTCGCATCGTTAAAAAAAACCCCGCCCTACATTCCCAGAAGTCATGGCTTCTTTACACGGCTGTTTCAGCTGTTCAGCAGTTGGTGCATGTTTTTAATCAGATACACACCGTGGTTCTTTGACGGAGAAGCTGGCCACTCCGAGCACGGCACCGAGAGCGTCGTTTCCACAGTGCAcgatgtgctgctgctgcttgtcGTATAACTCCTTGCTCATGATGTACTTGCCCAGGTAGAACATAacctaaatcacacacacacacacacacacacacacacacacacacacacacacacacacaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU327822 True 1379 lncRNA 0.39 2 4320491 4322681
TU327824 False 1071 lncRNA 0.40 2 4278059 4322681

Neighbor

gene id symbol gene type direction distance location
cd36 cd36 coding downstream 217545 4044706 ~ 4060514 (-)
kdm7aa kdm7a coding downstream 332758 3919302 ~ 3945301 (-)
kmt2e kmt2e coding downstream 371406 3857515 ~ 3906653 (-)
orc5 orc5 coding downstream 466443 3798341 ~ 3811616 (-)
hcls1 LOC108279643,LOC107095911,LOC105918344,LOC103358095,LOC102201149,LOC102292035,LOC101481917 coding downstream 522202 3738884 ~ 3755857 (-)
psmc2 psmc2,LOC103382982 coding upstream 461447 4784128 ~ 4792797 (-)
gys2 gys2,LOC107659841,LOC107694689 coding upstream 574589 4897270 ~ 4917780 (-)
ldhba ldhb,ldhba,LOC107659842,LOC107589975,LOC107725606,LOC107586539,LOC107744904,LOC107694687 coding upstream 603035 4925716 ~ 4938813 (-)
slc25a3a slc25a3a,slc25a3,LOC108279629,LOC108437945,LOC107732290 coding upstream 631610 4954291 ~ 4965093 (-)
strap strap,LOC107744907,LOC107586834,LOC107725662,LOC107694684 coding upstream 665800 4988481 ~ 5003791 (-)
G276497 NA non-coding downstream 22115 4255200 ~ 4255944 (-)
G276420 NA non-coding downstream 135111 4070448 ~ 4142948 (-)
G276447 NA non-coding downstream 152478 4124465 ~ 4125581 (-)
G276395 NA non-coding downstream 235538 3968695 ~ 4042521 (-)
G276388 NA non-coding downstream 361942 3915328 ~ 3916117 (-)
LOC117599554 LOC108279645 non-coding upstream 63661 4386342 ~ 4387104 (-)
LOC117599550 LOC108279645 non-coding upstream 76600 4399281 ~ 4399935 (-)
G276556 LOC108279645,LOC108274854 non-coding upstream 77442 4400123 ~ 4415116 (-)
LOC117599559 LOC108279645 non-coding upstream 80830 4403511 ~ 4404115 (-)
G276557 LOC108279645,LOC108274854 non-coding upstream 91778 4414459 ~ 4557257 (-)
G276421 NA other downstream 186196 4082278 ~ 4091863 (-)
golgb1 LOC108279640 other downstream 448657 3759211 ~ 3829402 (-)
G276340 NA other downstream 540982 3736130 ~ 3737077 (-)
G276075 NA other downstream 739316 3536997 ~ 3538743 (-)
lin7a lin7a other downstream 784043 3430190 ~ 3494016 (-)
LOC113523868 NA other upstream 8579 4331260 ~ 4343545 (-)
LOC117599555 LOC108279645 other upstream 34858 4357539 ~ 4457121 (-)
G276503 LOC108279645 other upstream 35944 4358625 ~ 4587096 (-)
LOC117599551 LOC108279645 other upstream 38651 4361332 ~ 4361942 (-)
LOC117599578 LOC108279645 other upstream 143380 4466061 ~ 4482565 (-)

Expression


Co-expression Network