G276530 (slc35e3,LOC107556774,LOC107710682)


Basic Information

Item Value
gene id G276530
gene name slc35e3,LOC107556774,LOC107710682
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4297860 ~ 4300524 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU327840
ACGACCCCTAACGTGATCGGCACCttacagagcaGAGTGAGTTTGATCTTGGTGGAGAAGCTCTTCTTGTAGAAGGTGGTCTGGATGAGGATGATGACCGGGGTGGTCATGGCTTTGGCCAGCTGGTACGTCCCGATGGTGTTGTTCTGCAGAGACAGGTTGGTGAAAGCCACGAAGCCGCAGAAGCTCAGCGCCAGGAGCAGGATGTTGGAAGCTCTCAGCCTCTTCGGAGAGAAAATGTTCATCTTCTGGCAGAAGAAGAGCCCGAGCCAGGTGACCACGAAGTGCACCAGGGTCAGGGTCATGTTGGGGAAGCCGTAGTGCACGTAGATCCATTTATTCATGAAGACGATGCAGATGGAGGAGAGCAGGTTGACCAGCAGTCCTGCCACAATCCGGCTGTTGGAGAAGAGCTTCCCCAGCCTCGGAGGCATGCCGGAAGTGTTTCACTTTCTGCTCAGTGCTAAAAGAGGAAACAAGAACTCACCTTCCGGAAGTCACCGAGGAGACAGTGAGGTTCAACGACCCGCGTGTCATCGCAGAATGGAGCTCAATCACTGTTCAAACA

Function

symbol description
slc35e3 Predicted to enable antiporter activity and nucleotide-sugar transmembrane transporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human SLC35E3 (solute carrier family 35 member E3).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU327840 True 568 TUCP 0.54 2 4297860 4300524

Neighbor

gene id symbol gene type direction distance location
cd36 cd36 coding downstream 237346 4044706 ~ 4060514 (-)
kdm7aa kdm7a coding downstream 352559 3919302 ~ 3945301 (-)
kmt2e kmt2e coding downstream 391207 3857515 ~ 3906653 (-)
orc5 orc5 coding downstream 486244 3798341 ~ 3811616 (-)
hcls1 LOC108279643,LOC107095911,LOC105918344,LOC103358095,LOC102201149,LOC102292035,LOC101481917 coding downstream 542003 3738884 ~ 3755857 (-)
psmc2 psmc2,LOC103382982 coding upstream 483604 4784128 ~ 4792797 (-)
gys2 gys2,LOC107659841,LOC107694689 coding upstream 596746 4897270 ~ 4917780 (-)
ldhba ldhb,ldhba,LOC107659842,LOC107589975,LOC107725606,LOC107586539,LOC107744904,LOC107694687 coding upstream 625192 4925716 ~ 4938813 (-)
slc25a3a slc25a3a,slc25a3,LOC108279629,LOC108437945,LOC107732290 coding upstream 653767 4954291 ~ 4965093 (-)
strap strap,LOC107744907,LOC107586834,LOC107725662,LOC107694684 coding upstream 687957 4988481 ~ 5003791 (-)
G276497 NA non-coding downstream 41916 4255200 ~ 4255944 (-)
G276420 NA non-coding downstream 154912 4070448 ~ 4142948 (-)
G276447 NA non-coding downstream 172279 4124465 ~ 4125581 (-)
G276395 NA non-coding downstream 255339 3968695 ~ 4042521 (-)
G276388 NA non-coding downstream 381743 3915328 ~ 3916117 (-)
G276538 NA non-coding upstream 8064 4308588 ~ 4309037 (-)
LOC117599554 LOC108279645 non-coding upstream 85818 4386342 ~ 4387104 (-)
LOC117599550 LOC108279645 non-coding upstream 98757 4399281 ~ 4399935 (-)
G276556 LOC108279645,LOC108274854 non-coding upstream 99599 4400123 ~ 4415116 (-)
LOC117599559 LOC108279645 non-coding upstream 102987 4403511 ~ 4404115 (-)
G276421 NA other downstream 205997 4082278 ~ 4091863 (-)
golgb1 LOC108279640 other downstream 468458 3759211 ~ 3829402 (-)
G276340 NA other downstream 560783 3736130 ~ 3737077 (-)
G276075 NA other downstream 759117 3536997 ~ 3538743 (-)
lin7a lin7a other downstream 803844 3430190 ~ 3494016 (-)
LOC113523868 NA other upstream 30736 4331260 ~ 4343545 (-)
LOC117599555 LOC108279645 other upstream 57015 4357539 ~ 4457121 (-)
G276503 LOC108279645 other upstream 58101 4358625 ~ 4587096 (-)
LOC117599551 LOC108279645 other upstream 60808 4361332 ~ 4361942 (-)
LOC117599578 LOC108279645 other upstream 165537 4466061 ~ 4482565 (-)

Expression


Co-expression Network