G276557 (LOC108279645,LOC108274854)


Basic Information

Item Value
gene id G276557
gene name LOC108279645,LOC108274854
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4414459 ~ 4557257 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU327871
ttgcagtgagactaaataaagtataaatctGGCTGCTTATAAAGTTTCAGACAGTTTGTCAGTAGTAGTGCTGAAGACCTGGCCAGTGTTCCACATTTAAAAGAATGTGAGGAATTATACTTGATGTATTGTTTCTCCATTAGGGAGATTCTGAAGTTTAATGGTTTATTTTATGGCTGACTTTACTCTGTTACACACGACTAATACTGTAAAAGGGATCAATAAGAAGACTTCAGTTAGTATCTTCCACTCTTCCACTTCTCCTGCATTGGTGCAGATTCATATCTCCTAATAAACTGCCAGAACAGAATCATTTCAATTATAAAAGAAACAGTGGCCCTAAAAGTGAACCTTGTGGAACGCCATGTTTGTAGTCTGTAATCCAGCTGGATCCGAAAGGAAAATGTGGTTCAGacagaaataattaaaccaACTAATAACTGTGTTTCTTCAAGAGTTTTGACATACAGTCAGGTAGAATTTCATGATGCCTGTGTCAGTGTTATTATTAAGTCAGAATAAGGTTCATGATATGGTTTATGAAAAGGTAATTtcatgtaagagagagagagtgagaagtgAGGTGTAAGTGAGATTTGCATTAGCAGGACTGAATAGTTTCATTTCTCCCAGAATAGAGCAGAAACTTCACCAGATGTTCAACTTCCTTCAGTCaaactcactgaagcacaacacacagcactgaatctacagctaatcccactctctcatcacactgatcatcactattaactctaataaaagaacagaCAACGTCCaaaattcagctttatttcagcaaaaaCTACAGGAAGAGCAACAGGGCAGTGAacagagtaaagacagaaatgtcagcattgtgtaGAATTGAAACTCTAATGTAGATGGATCAGAAGCAGCTCTATGTTAAACTCTATCTTGGATCCACTAGCCTTCACACTGACTCTTTCTGAACGTGACTGGATGATTGACGTTGTTATGGGAGACCTTACAGCTGaactcctcccccttttcccagaggtctttgctgagggtcagggtgctgctgcGGCTGTAACGGCcgttcttctcttcttctgcgCTGGTCAGAACCCCGTTCTTCACCTCTGAGCCGTCCACTGTCCAGCTAACCAGCGCCCCCTGTGGAGAGTAGCcagacagcaggcagagcagcgagGCCGATCCCTCAGACAGCTGCAGAGGGGATGGAGAGAGCAGAGACACGGACGGCTTCACCACGGGACCCGCTGGagaggagaaacacacacacatcatacacacg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU327871 True 1282 lncRNA 0.43 3 4414459 4557257

Neighbor

gene id symbol gene type direction distance location
cd36 cd36 coding downstream 353945 4044706 ~ 4060514 (-)
kdm7aa kdm7a coding downstream 469158 3919302 ~ 3945301 (-)
kmt2e kmt2e coding downstream 507806 3857515 ~ 3906653 (-)
orc5 orc5 coding downstream 602843 3798341 ~ 3811616 (-)
hcls1 LOC108279643,LOC107095911,LOC105918344,LOC103358095,LOC102201149,LOC102292035,LOC101481917 coding downstream 658602 3738884 ~ 3755857 (-)
psmc2 psmc2,LOC103382982 coding upstream 226871 4784128 ~ 4792797 (-)
gys2 gys2,LOC107659841,LOC107694689 coding upstream 340013 4897270 ~ 4917780 (-)
ldhba ldhb,ldhba,LOC107659842,LOC107589975,LOC107725606,LOC107586539,LOC107744904,LOC107694687 coding upstream 368459 4925716 ~ 4938813 (-)
slc25a3a slc25a3a,slc25a3,LOC108279629,LOC108437945,LOC107732290 coding upstream 397034 4954291 ~ 4965093 (-)
strap strap,LOC107744907,LOC107586834,LOC107725662,LOC107694684 coding upstream 431224 4988481 ~ 5003791 (-)
LOC117599559 LOC108279645 non-coding downstream 10344 4403511 ~ 4404115 (-)
LOC117599550 LOC108279645 non-coding downstream 14524 4399281 ~ 4399935 (-)
LOC117599554 LOC108279645 non-coding downstream 27355 4386342 ~ 4387104 (-)
G276515 NA non-coding downstream 91778 4278059 ~ 4322681 (-)
G276538 NA non-coding downstream 105422 4308588 ~ 4309037 (-)
LOC117599581 LOC108279645 non-coding upstream 19213 4576470 ~ 4577038 (-)
LOC117599580 LOC108279645 non-coding upstream 28999 4586256 ~ 4586992 (-)
G276749 NA non-coding upstream 241402 4798659 ~ 4799157 (-)
G276755 prdm4 non-coding upstream 244650 4801907 ~ 4844371 (-)
G276761 NA non-coding upstream 259851 4817108 ~ 4876792 (-)
LOC117599551 LOC108279645 other downstream 52517 4361332 ~ 4361942 (-)
LOC113523868 NA other downstream 70914 4331260 ~ 4343545 (-)
G276530 slc35e3,LOC107556774,LOC107710682 other downstream 113935 4297860 ~ 4300524 (-)
G276421 NA other downstream 322596 4082278 ~ 4091863 (-)
golgb1 LOC108279640 other downstream 585057 3759211 ~ 3829402 (-)
G276650 LOC108279602 other upstream 177674 4734931 ~ 4738999 (-)
tmpoa LOC108279628 other upstream 408975 4966232 ~ 4984315 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other upstream 1423881 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other upstream 1425035 5982292 ~ 5984564 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 2864731 7421988 ~ 7500079 (-)

Expression


Co-expression Network