G276749


Basic Information

Item Value
gene id G276749
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4798659 ~ 4799157 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU328119
CCAGAGTTGAGGCGTGTCTTTATCAGTCCAGTCTGAGAGCTCTACGCTGCTGCAGTGCTGTCCGACCATCGGGCCGAAGCAGGTCCTGCTGGGAATCGTCTCCCGTGCAAACACACCTGAGGAGATTACGTACAAAATATCTTCACTGACCGTTGGGCTCGTCAGCCACAGACACACGCAGGCACAGTGGGCGGGGCAAAGAGAGGCGGGCTCTGCTCTGAATGGGCGTGTCTGGGATGAAGGTGACGGGGCCGTGTTCAGGACAGTCGGAGCTGTAAGAGCGCTCACATAAAGTGCACCCTACACACACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU328119 True 311 lncRNA 0.58 2 4798659 4799157

Neighbor

gene id symbol gene type direction distance location
psmc2 psmc2,LOC103382982 coding downstream 5862 4784128 ~ 4792797 (-)
cd36 cd36 coding downstream 738145 4044706 ~ 4060514 (-)
kdm7aa kdm7a coding downstream 853358 3919302 ~ 3945301 (-)
kmt2e kmt2e coding downstream 892006 3857515 ~ 3906653 (-)
orc5 orc5 coding downstream 987043 3798341 ~ 3811616 (-)
gys2 gys2,LOC107659841,LOC107694689 coding upstream 98113 4897270 ~ 4917780 (-)
ldhba ldhb,ldhba,LOC107659842,LOC107589975,LOC107725606,LOC107586539,LOC107744904,LOC107694687 coding upstream 126559 4925716 ~ 4938813 (-)
slc25a3a slc25a3a,slc25a3,LOC108279629,LOC108437945,LOC107732290 coding upstream 155134 4954291 ~ 4965093 (-)
strap strap,LOC107744907,LOC107586834,LOC107725662,LOC107694684 coding upstream 189324 4988481 ~ 5003791 (-)
sox5 sox5,LOC107725540,LOC107590035,LOC107587062 coding upstream 281655 5080812 ~ 5315907 (-)
LOC117599580 LOC108279645 non-coding downstream 211667 4586256 ~ 4586992 (-)
LOC117599581 LOC108279645 non-coding downstream 221621 4576470 ~ 4577038 (-)
LOC117599444 LOC108279645 non-coding downstream 243564 4554619 ~ 4555095 (-)
LOC117599576 LOC108279645 non-coding downstream 253505 4544541 ~ 4545154 (-)
LOC117599582 LOC108279645 non-coding downstream 259835 4527788 ~ 4538824 (-)
G276755 prdm4 non-coding upstream 2750 4801907 ~ 4844371 (-)
G276761 NA non-coding upstream 17951 4817108 ~ 4876792 (-)
G276753 NA non-coding upstream 81261 4880418 ~ 4881008 (-)
LOC113531850 NA non-coding upstream 144392 4943549 ~ 4945278 (-)
G276980 NA non-coding upstream 307723 5106880 ~ 5110968 (-)
G276650 LOC108279602 other downstream 59660 4734931 ~ 4738999 (-)
G276503 LOC108279645 other downstream 211563 4358625 ~ 4587096 (-)
LOC117599578 LOC108279645 other downstream 316094 4466061 ~ 4482565 (-)
LOC117599555 LOC108279645 other downstream 341538 4357539 ~ 4457121 (-)
LOC117599551 LOC108279645 other downstream 436717 4361332 ~ 4361942 (-)
tmpoa LOC108279628 other upstream 167075 4966232 ~ 4984315 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other upstream 1181981 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other upstream 1183135 5982292 ~ 5984564 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 2622831 7421988 ~ 7500079 (-)
avpr1ab LOC108279517 other upstream 3167662 7966819 ~ 7970571 (-)

Expression


Co-expression Network