G276753


Basic Information

Item Value
gene id G276753
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4880418 ~ 4881008 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU328123
TGGCTCTTTCAGCTGTTAAAGCAGTTAAGAATAAAGATCATGAAGCATCATGAAGcatcagagagaaagacacagcaGTGATTAATTCCCTGGTGTATTTATTCCTAAGTCATTGTTACACATTGACTACAATTTCCAGTTTTCATCTGTGCTAACAActcagtgaaataaaacactgtttgtttaaccagtcttagcagaagtgcttttaaaaatatatttcataaagCTAACGAACTGTATGAGTTCATGATCACTCTTAGTGTATAGCCTTTCACTTTAAAATATCGCACTTTAAAACATCGCACAGTAAAAGgcttaaaaggttaaaaatattACCCTGTAAGCCTTTTACTGGGTTTATGAAGTGCACTTACACTTtcttatatatacaaaaaaaaaaaaaaaaaaaaaaaaaaaaacttgtttatttGGATCCAAAGTCTATCAGGAGACTGAGATCACTCTCAGGGACAATCTGTTCCACTTTTATACAGATCATCCATAAATGTTTTAACAGATCCATCAATGTGCATGAAAATGTAACAAATATCCAGCAGAACTTAACAAATATTAGtaaatacatgtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU328123 True 591 lncRNA 0.32 1 4880418 4881008

Neighbor

gene id symbol gene type direction distance location
psmc2 psmc2,LOC103382982 coding downstream 87621 4784128 ~ 4792797 (-)
cd36 cd36 coding downstream 819904 4044706 ~ 4060514 (-)
kdm7aa kdm7a coding downstream 935117 3919302 ~ 3945301 (-)
kmt2e kmt2e coding downstream 973765 3857515 ~ 3906653 (-)
orc5 orc5 coding downstream 1068802 3798341 ~ 3811616 (-)
gys2 gys2,LOC107659841,LOC107694689 coding upstream 16262 4897270 ~ 4917780 (-)
ldhba ldhb,ldhba,LOC107659842,LOC107589975,LOC107725606,LOC107586539,LOC107744904,LOC107694687 coding upstream 44708 4925716 ~ 4938813 (-)
slc25a3a slc25a3a,slc25a3,LOC108279629,LOC108437945,LOC107732290 coding upstream 73283 4954291 ~ 4965093 (-)
strap strap,LOC107744907,LOC107586834,LOC107725662,LOC107694684 coding upstream 107473 4988481 ~ 5003791 (-)
sox5 sox5,LOC107725540,LOC107590035,LOC107587062 coding upstream 199804 5080812 ~ 5315907 (-)
G276761 NA non-coding downstream 3626 4817108 ~ 4876792 (-)
G276755 prdm4 non-coding downstream 36047 4801907 ~ 4844371 (-)
G276749 NA non-coding downstream 81261 4798659 ~ 4799157 (-)
LOC117599580 LOC108279645 non-coding downstream 293426 4586256 ~ 4586992 (-)
LOC117599581 LOC108279645 non-coding downstream 303380 4576470 ~ 4577038 (-)
LOC113531850 NA non-coding upstream 62541 4943549 ~ 4945278 (-)
G276980 NA non-coding upstream 225872 5106880 ~ 5110968 (-)
G276985 NA non-coding upstream 243465 5124473 ~ 5125478 (-)
LOC117599571 NA non-coding upstream 434899 5315907 ~ 5326714 (-)
G277065 NA non-coding upstream 474892 5355900 ~ 5358204 (-)
G276650 LOC108279602 other downstream 141419 4734931 ~ 4738999 (-)
G276503 LOC108279645 other downstream 293322 4358625 ~ 4587096 (-)
LOC117599578 LOC108279645 other downstream 397853 4466061 ~ 4482565 (-)
LOC117599555 LOC108279645 other downstream 423297 4357539 ~ 4457121 (-)
tmpoa LOC108279628 other upstream 85224 4966232 ~ 4984315 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other upstream 1100130 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other upstream 1101284 5982292 ~ 5984564 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 2540980 7421988 ~ 7500079 (-)
avpr1ab LOC108279517 other upstream 3085811 7966819 ~ 7970571 (-)

Expression


Co-expression Network