G276755 (prdm4)


Basic Information

Item Value
gene id G276755
gene name prdm4
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4801907 ~ 4844371 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU328127
CAAGATTTatagaaattaatttatttgtaaatgacCTCATTTCATAATGTACGGTGGCTTCACTCAatgaaattatacaaataaataacaactaaGGCAAAGTGTAAAAAAGGAACTGATTTCACTAAACATTAAAATGGCAGTGTTTCAGATACAGCGTGTTTTTTCTGACCACCACTGGCATCCTCTGAGCTGAGCAAGTTTCATCTTCATGAATTGTTCCATACATCAGAGCGTACAAATAACTTGGCACATCAGAAAGTAAAACAGAAtgtaaactgaataaaaagtaccaaataaagtgtaaagtacTAAAGAAAGCAAATCGCAAAATCACAGTGAGAGGTTACAGAGTCTTATCTGAGGAAAACCCCACAATGCCAATGTCACACTCTTTTCTCTCGTCTGGTGCTCTTAAATCTCTTTCCTGTTCTTCGTCTGGTTCTTCTTCCTCATCCCCgtcttcctcctctccttcctcttcaTGAGCGGCCCCTCTGCCTGTCTTTGGGCCTTTGCAGATTTTCAGATGGCGTGTCAGATGGTATTTCGTGAGGAAGCCCTTGTTGCATTTTTCACAGATGAAGTCTCTTTTCCCGTCATGGGAGTTGAGGTGCTTCTTTAAGTGATCGGTTTTGAGGAACTGTTTGTCGCACTTCGGGCAGGTGATCTGACGGTcgctgaagaaaaacaaacagacaccGAGGTTAACATGATGTACGCCTTTTGATGAAGAGAATGAATGAGGTAAAAATGTGAGGTAAAATAACGCTAATAACCCTACAGCCACTCTACCAAACGACAAAGCTTC

Function

symbol description
prdm4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of gene expression. Predicted to act upstream of or within transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in presumptive neural retina; retina; and somite. Orthologous to human PRDM4 (PR/SET domain 4).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU328127 True 811 lncRNA 0.40 2 4801907 4844371

Neighbor

gene id symbol gene type direction distance location
psmc2 psmc2,LOC103382982 coding downstream 9110 4784128 ~ 4792797 (-)
cd36 cd36 coding downstream 741393 4044706 ~ 4060514 (-)
kdm7aa kdm7a coding downstream 856606 3919302 ~ 3945301 (-)
kmt2e kmt2e coding downstream 895254 3857515 ~ 3906653 (-)
orc5 orc5 coding downstream 990291 3798341 ~ 3811616 (-)
gys2 gys2,LOC107659841,LOC107694689 coding upstream 52899 4897270 ~ 4917780 (-)
ldhba ldhb,ldhba,LOC107659842,LOC107589975,LOC107725606,LOC107586539,LOC107744904,LOC107694687 coding upstream 81345 4925716 ~ 4938813 (-)
slc25a3a slc25a3a,slc25a3,LOC108279629,LOC108437945,LOC107732290 coding upstream 109920 4954291 ~ 4965093 (-)
strap strap,LOC107744907,LOC107586834,LOC107725662,LOC107694684 coding upstream 144110 4988481 ~ 5003791 (-)
sox5 sox5,LOC107725540,LOC107590035,LOC107587062 coding upstream 236441 5080812 ~ 5315907 (-)
G276749 NA non-coding downstream 2750 4798659 ~ 4799157 (-)
LOC117599580 LOC108279645 non-coding downstream 214915 4586256 ~ 4586992 (-)
LOC117599581 LOC108279645 non-coding downstream 224869 4576470 ~ 4577038 (-)
LOC117599444 LOC108279645 non-coding downstream 246812 4554619 ~ 4555095 (-)
LOC117599576 LOC108279645 non-coding downstream 256753 4544541 ~ 4545154 (-)
G276753 NA non-coding upstream 36047 4880418 ~ 4881008 (-)
LOC113531850 NA non-coding upstream 99178 4943549 ~ 4945278 (-)
G276980 NA non-coding upstream 262509 5106880 ~ 5110968 (-)
G276985 NA non-coding upstream 280102 5124473 ~ 5125478 (-)
LOC117599571 NA non-coding upstream 471536 5315907 ~ 5326714 (-)
G276650 LOC108279602 other downstream 62908 4734931 ~ 4738999 (-)
G276503 LOC108279645 other downstream 214811 4358625 ~ 4587096 (-)
LOC117599578 LOC108279645 other downstream 319342 4466061 ~ 4482565 (-)
LOC117599555 LOC108279645 other downstream 344786 4357539 ~ 4457121 (-)
tmpoa LOC108279628 other upstream 121861 4966232 ~ 4984315 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other upstream 1136767 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other upstream 1137921 5982292 ~ 5984564 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 2577617 7421988 ~ 7500079 (-)
avpr1ab LOC108279517 other upstream 3122448 7966819 ~ 7970571 (-)

Expression


Co-expression Network