G276761


Basic Information

Item Value
gene id G276761
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4817108 ~ 4876792 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU328136
tttgctgttctttttttaatttatttcagaacAAACACCAGAACCATGATTGAAGCTTCAACTTTATTTTGGATGTTTCATCAATCCAAAAGCCTAAAAAGTAGCCAGGTAGAATGAAATCAGATTAAATCTGAAACATGGAGTGTTGAGACAAACCAAATCACATAAAAATTTTGAGAACAATAAGGAgtcaataataaaagtaatttcaGACATGAGTACGACTGACAACTTTCTAATCTGTTCCTCCAAAAACAGACTTCACATACATCATTCTCAGAAATGTGCATTAAGATTACTCTTAACATACAAGCGCttggttaaaaataaagtgaaatgtgGAACGATGCTTCAGGTTATTTTGTCTGGGGCAGTGCCATCAATTAATTACACTTCCTTTAtgtttcatttgatttgatctatatcaaaaatcatttaTCCTTTTCTACTGAATTTCTTTCACAAAAATTTTTGTGCAGATCAGAAGtgaacttaataataattatgggacataaaaaggaaaaaaaaattatggcagatttaaaaataagtgcTTTCAGGATATGTTTTTACGGGCCACTAATATGCCAAAAGTGGATactggatatacagtatattagtctAGATTGTATGATGTCTTCTTATTTTCAATCTTTGAGATTCAAAGCAACAAAAGCACTAAAGGTTAAGGTTAATGCTGTTTTAGCCCAGTTTAAAAGATTAGAGAACTTTTACGTTGAAGATAAGTGAGCATTTAACAATCACACTGCGTCGTCTTATCACCACGGTGAAGATGTGTATTGAAGTTAATCACAGCTTTagtatttaagaaagaaaagtgtacATCGACCCCGTGGTTTTCGTGCCGTTCTTCACTTTCAGTACTCAGCATTAAACGGATAATATCTGTGCTTCACactcctgggaaaaaaaaagggaaagttaTCCATCCGTAATTCTCATGTCATATGTACAGAGATCACATGGATATTGTTTATAATATAAAGCACTCACCACTGCATGGGACAAACCCTGTAGTTTCTGTTGTAGCTTAAAATGGTCTTCATTTCATCGTCACTCAGTTCAAAGTCAAACACCTGGCAtcgtaaataaaatgaatttcaaaCACGATAAGTCGGAACGTTTTCCAGCATCAAGGAGTTTCAGGCTTTTCCATCAAAGCTTACCTGGAAGTTCTCCTTGATGCGGGACGGAGTAACAGACTTCGGGATCACAATGACTTTCCTCTGGACGTTGAAGCGGAGCAGGACCTGGAGATACAGAACAGCTGTTTT
>TU328138
CATGATTGAAGCTTCAACTTTATTTTGGATGTTTCATCAATCCAAAAGCCTAAAAGTACCCAAGTAGaatgaaatcaaattaaatctgaaacatCATCATTTTGAGAACAATAAGGagtcaataataaaaataatttcagacaTGAGTACGACTGACAACTTTCCAATCTGTTCCTCCAAAAACAGACTTCACATACATCATTCTCAGAAATGTGCATTAAGATTACTCTTAACATACATGTGCttggttaaaaataaagtgaaatgtgGAACGATGCTTCAGGTTATTTTGTCTGGGGCAGTGCCATCAATTAATTACACTTCCTTAATGTTTCatttgatttgatCTATATCAAAAATCACGTATCCTTTCATTTCTACTGAATTTCTTTCGCACAGATCAGAAGTAAACTTTGAATAATTATGGGACctaaagagggaaaaaatgatgGAGGATTTAAAAGTAAGTGCTTTCAGGTGGGTTGCAGCATTCATGGTGAAATATCAAGTGTTCTCCATTAAGGCAAatagcaacaataataacaaaaactTTGCACAATCTGACAATGCTGATGTAAACttgaaacaaaataatataaagtgtgGATATGTTGTTACAGGCCACTAATATGCCAAAAGAGGATactggatatacagtatattagtctAGATTGTATGATGTCTTCTTATTTTCAATCTTTGAGATTCAAAGCAACAAAAGCACTAAAGGTTAAGGTTAATGCTGTTTTAGCCCAGTTTAAAAGATTAGAGAACTTTTACGTTGAAGATAAGTGAGCATTTAACAATCACACTGCGTCGTCTTATCACCACGGTGAAGATGTGTATTGAAGTTAATCACAGCTTTagtatttaagaaagaaaagtgtacATCGACCCCGTGGTTTTCGTGCCGTTCTTCACTTTCAGTACTCAGCATTAAACGGATAATATCTGTGCTTCACactcctgggaaaaaaaaagggaaagttaTCCATCCGTAATTCTCATGTCATATGTACAGAGATCACATGGATATTGTTTATAATATAAAGCACTCACCACTGCATGGGACAAACCCTGTAGTTTCTGTTGTAGCTTAAAATGGTCTTCATTTCATCGTCACTCAGTTCAAAGTCAAACACCTGGCAtcgtaaataaaatgaatttcaaaCACGATAAGTCGGAACGTTTTCCAGCATCAAGGAGTTTCAGGCTTTTCCATCAAAGCTTACCTGGAAGTTCTCCTTGATGCGGGACGGAGTAACAGACTTCGGGATCACAATGACTTTCCTCTGGACGTTGAAGCGGAGCAGGACCTGGAGATACAGAACAGCTGTTTT
>TU328142
CACCAGAACCATGATTGAAGCTTCAACTTTATTTTGGATGTTTCATAAATCCAAAAGCCTAAAAGTAGCCAGGTAGAATGAAATCAGATTAAATCTGAAACATCATCATTTTGAGAACAATAAGGagtcaataataaaaataatttcagaacaAACACCAGAACCATGATTGAAGCTTCAACTTTATTTTGGATGTTTCATAAATCCAAAAGCCTAAAAAGTAGCCAGGTAGAATGAAATCAGATTAAATCTGAAACATCATCATTTTGAGAACAATAAGGagtcaataataaaaataatttcagacaTGAGTACGACTGACAACTTTCCAATCTGTTCCTCCAAAAACAGACTTCACATACATCATTCTCAGAAATGTGCATTAAGATTACTCTTAACATACATGTGCttggttaaaaataaagtgaaatgtaGAACGATGCTTCAGGTTATTTTGTCTGGGGCAGTGCCATCAATTAATTACACTTCCTTTAtgtttcatttgatttgatCTATATCAAAAATCACGTATCCTTTCATTTCTACTGAATTTCTTTCGCACAGATCAGAAGTAAACTTTGAATAATTATGGGACctaaagagggaaaaaatgatgGAGGATTTAAAAGTAAGTGCTTTCAGGTGGGTTGCAGCATTCATGGTGAAATATCAAGTGTTCTCCATTAAGGCAAatagcaacaataataacaaaaactTTGCACAATCTGACAATGCTGATGTAAACttgaaacaaaataatataaagtgtgGATATGTTGTTACAGGCCACTAATATGCCAAAAGAGGATactggatatacagtatattagtctAGATTGTATGATGTCTTCTTATTTTCAATCTTTGAGATTCAAAGCAACAAAAGCACTAAAGGTTAAGGTTAATGCTGTTTTAGCCCAGTTTAAAAGATTAGAGAACTTTTACGTTGAAGATAAGTGAGCATTTAACAATCACACTGCGTCGTCTTATCACCACGGTGAAGATGTGTATTGAAGTTAATCACAGCTTTagtatttaagaaagaaaagtgtacATCGACCCCGTGGTTTTCGTGCCGTTCTTCACTTTCAGTACTCAGCATTAAACGGATAATATCTGTGCTTCACactcctgggaaaaaaaaagggaaagttaTCCATCCGTAATTCTCATGTCATATGTACAGAGATCACATGGATATTGTTTATAATATAAAGCACTCACCACTGCATGGGACAAACCCTGTAGTTTCTGTTGTAGCTTAAAATGGTCTTCATTTCATCGTCACTCAGTTCAAAGTCAAACACCTGGCAtcgtaaataaaatgaatttcaaaCACGATAAGTCGGAACGTTTTCCAGCATCAAGGAGTTTCAGGCTTTTCCATCAAAGCTTACCTGGAAGTTCTCCTTGATGCGGGACGGAGTAACAGACTTCGGGATCACAATGACTTTCCTCTGGACGTTGAAGCGGAGCAGGACCTGGAGATACAGAACAGCTGTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU328136 False 1295 lncRNA 0.35 3 4817108 4841754
TU328138 False 1340 lncRNA 0.36 3 4817108 4876792
TU328142 True 1505 lncRNA 0.35 3 4817108 4862107

Neighbor

gene id symbol gene type direction distance location
psmc2 psmc2,LOC103382982 coding downstream 24311 4784128 ~ 4792797 (-)
cd36 cd36 coding downstream 756594 4044706 ~ 4060514 (-)
kdm7aa kdm7a coding downstream 871807 3919302 ~ 3945301 (-)
kmt2e kmt2e coding downstream 910455 3857515 ~ 3906653 (-)
orc5 orc5 coding downstream 1005492 3798341 ~ 3811616 (-)
gys2 gys2,LOC107659841,LOC107694689 coding upstream 20478 4897270 ~ 4917780 (-)
ldhba ldhb,ldhba,LOC107659842,LOC107589975,LOC107725606,LOC107586539,LOC107744904,LOC107694687 coding upstream 48924 4925716 ~ 4938813 (-)
slc25a3a slc25a3a,slc25a3,LOC108279629,LOC108437945,LOC107732290 coding upstream 77499 4954291 ~ 4965093 (-)
strap strap,LOC107744907,LOC107586834,LOC107725662,LOC107694684 coding upstream 111689 4988481 ~ 5003791 (-)
sox5 sox5,LOC107725540,LOC107590035,LOC107587062 coding upstream 204020 5080812 ~ 5315907 (-)
G276749 NA non-coding downstream 17951 4798659 ~ 4799157 (-)
LOC117599580 LOC108279645 non-coding downstream 230116 4586256 ~ 4586992 (-)
LOC117599581 LOC108279645 non-coding downstream 240070 4576470 ~ 4577038 (-)
LOC117599444 LOC108279645 non-coding downstream 262013 4554619 ~ 4555095 (-)
LOC117599576 LOC108279645 non-coding downstream 271954 4544541 ~ 4545154 (-)
G276753 NA non-coding upstream 3626 4880418 ~ 4881008 (-)
LOC113531850 NA non-coding upstream 66757 4943549 ~ 4945278 (-)
G276980 NA non-coding upstream 230088 5106880 ~ 5110968 (-)
G276985 NA non-coding upstream 247681 5124473 ~ 5125478 (-)
LOC117599571 NA non-coding upstream 439115 5315907 ~ 5326714 (-)
G276650 LOC108279602 other downstream 78109 4734931 ~ 4738999 (-)
G276503 LOC108279645 other downstream 230012 4358625 ~ 4587096 (-)
LOC117599578 LOC108279645 other downstream 334543 4466061 ~ 4482565 (-)
LOC117599555 LOC108279645 other downstream 359987 4357539 ~ 4457121 (-)
tmpoa LOC108279628 other upstream 89440 4966232 ~ 4984315 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other upstream 1104346 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other upstream 1105500 5982292 ~ 5984564 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 2545196 7421988 ~ 7500079 (-)
avpr1ab LOC108279517 other upstream 3090027 7966819 ~ 7970571 (-)

Expression


Co-expression Network