tmpoa (LOC108279628)


Basic Information

Item Value
gene id tmpoa
gene name LOC108279628
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4966232 ~ 4984315 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU328176
CTTTTAGCAAATGTGTTGAGTGAAGTGTGCGAGACGAAAACGACtcggagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtatatatataaggaaGAAGACGATGAGTCGGAGGCAGAAGAGCTTCAGGTGGTGAATGTTGAGAGAAAGTCGAGGAGGTCTTCTCGCCGGCTGGATCACGCTGTTCCTGACCCTGTAACATCATGTCTTCTTGTTTTTCACGTCTGCTTTCTCTGGGCTGCTTTATAGCTTCACTAAGGGCTCTCGGATTTTCCGTTCAGCACATTGCGTCTGTTCTTGTGCACCTTTCCTGGGACCTTTTCTGGAGCACGTTTTATCTGAGCCATAGCCGTTTTACGACtgcattatacatttatttttttatcttgtacGTCTTCTTGTACTCTCGAAGGTTTCGGCATCTGAGATGCTGCCAGTTCCTCGGGAGAGAAAAAGATTTTCGGTATGTAAATGAAGAACACTTGGGCAGCCTTGGATTCATCGGTTTACTTTCTTAGTATCATGAACGATTTTCTTCTATCGAAGGCGATACCTAAAGATCCGAAGCCGCTGCTCGCGGACATGCTGCCGATATTTCCCTCAGTGAGCGCGGACGGCTTGTCCGGGTCTCCTGAACGTCTTCCGGCTTCAGTCCACGCCGCTTTGGATGATTACGACGAAGCCTTTTCCACTGACAAGGTGCTGTGTGAAGTAGatctgttttaaaatttttttttttcgttttccAGCACTGGGTGAAGGGAACTGATTTCTCAAGCTCGTTACTGTCTGATAAACTCTTCCTCAGTTTTATAAAAGGGTTCAGCTCCCTGTGAAGACCGTGGAGCCACATGGTACACCATCACCTTCCTGGCagcaagaaagaaacaaagcaagAAAGGTGcttttacacatatatataatatatatacatacactatatatatatctccaaaCCTGACACGATCACTTTGGTGAATTTTAGTTCAGAAAGTTGTTGATgttcttgaagtgttttattttttaaatttattaaagaacgatgCTTCGTactttatccatttgtagttacatttaatgttataacCTATAAAACAAGAtggttcctcttatcacttacattaaagcagctataaatcACTAGCctcgttttttttctccccctttcGCTTGACGTTTAGACAAAATTTCCAGCTTATCATGGTggcgagaaaccgcaaagcgtaaactcctccgtcccgAAGATTTAcagcgctggcactggagactccttccataaatgttaaataaacgtctcgttactttaagaaaactttcaccatatcaacttaTATCACCATATCGGTTACTATAGCaacggtaacgtattagaacgagcgcattaagaGAAACCTGTGATGgcacagctgctgttacagaaaattgatcagcaccaatcagaatccagcagcTCTAACTGGTGATGAGTAAAATTAGGCATGGGTTATATGCAGTCATGGAATTGGTTAGATGTTATGAATCACTATCCTGCCTCGTTTGTAACATTATAACACACAAAATGATCCGTTTATATAGgaataaatgtatgtttttgctTCTCTAAAGCTTAGTGAAAGTGCTGCTGCTCTGCCTAAAGCGTCCGGTGAGGAAGTACAGCTTTCCCTCCTCGATACCGCTCTCCTCGAGGTGATTTCTTCATGCACCTTCTTCCTCATTGTAGTTTTACTGGAAACACTACAGAAGCTCACAATCCACATCCTTACTGAAGCAaaatggtttttattttatgtatttgcaTATCAGGTTGGTCCACATGAGGTTCTGGGCTCTAGACCTGGTCATGTGGTAGGTACTGAGATTCTTAGACATGGTTTTATGAGAT
>XM_026923411.2
CTCTGACCCTGGCCCTGGAGACGAGGAACATGGGACTGGGCTGTAACGGCTAATGGTGGTGCAGGCAGGCGCGCGCgctgttagagagagagagagagcagaagaagaagaagcagaagcagcagcagcagcagcagaagaagaagaaagcagcCATGGCGGAATTTCTCAGCGACCCGTCTGTGTTGACTAAAGACAAGCTGAAAAGCGCGCTGGTGGCCAACAACGTGGCGCTACCGAACGGAGAGCAGCGGAAAGGAGTGTATGTGGAGCTGTATCTGAAGAACCTGACCTCCCAGAACAAGAGGAGCGGCTCCGCGGCGGAGGCTTTCTCCAGCGACGAGGAGCCTCCAGCCCCCGCCGCCGCCTCCATTACAGCTCGCTCCGGCAGGAAAGCCACAAGGAAAACAGACCGAGTTCGTCCTGAGGAGATCGACGTGACCGAACTGACCAACGAGGAGCTGAAGGACCAGCTGCTGAAGTACGGAGTCAACGCCGGACCCATCGTAGCATCCACCCGTAAAGTGTACGAGAAGAAGCTGCAGAAGTTACTGGACCAGGGTCCTCCTCAGACCAGCGTCATCGCCGTCTCCGAGCCGGTTCCGACCCACAACAGCCGTAACGGGAATGCAGACTCGGATCAGTACAGCGATAAAGAGGAAGaaacaacagcagcagcaccagTTCCAGAGCCAGAACCCGAGCCGGAACCGGAACCGGAGCCTGTCCCCGTGGTGGAGCGGCCGCTGAGGAGCCGAGGAAAAACACCAGTGACCACCCGAACTCGAAGCAGCCAGAACAAGATTGAGAAGTTATCAGCCGTTGAGCAGACCCCAAAAACAGCAGAGAGAGACGTGCTGAAGGAATTGTTCCCTAACGAGGTCCTCAACACTCCCACGGGAATCAGCGCCACTCGTCGGCAGCCGATTAAAGGAGCAGCGGGCCGGCCCTTCAGCAGCCCCTGGCAGGACAGCCTGCGTCCACGTCTCACCGAACACAGATACACCAGTTCATCCTACACGGAGACCCGATCTGTCCCTCGCGTCAGCGCCGTCCCTCGCGTCAGCGCCGTCCCTCGCGTCAGCGCCGTCCCCCTGTCCGTCCCCAAACCCGCAGCGCCCCCGAGTGTCCCGGCCAAAGCGCGGCGCCGCGTGCCCGTGTGGGTGCAGCTGCTGCTCCTCAGTGCCGTCGCCGGCTTCCTGCTGTTCGTCTACCAGGCCATGGAGAGCAACCAGATGAGTCCGTTTGGGCAGCCGGGCCGCACCGGTGCGCTAGATAACGCCTGAGAATGAACAGTCTGTCTTTAACGTACCTTCAGACCACCGGCGTTTAAAGACTTCTCTCTTCCCTGTACATCGTTTTTCTAACTCGCCCAGTCCAGAGAACCATCCGGAACCAAACGAGATCGCCAGAACCCGTTTGCGATTCTTTTCTGATCAGTTTTCGAGGGCTCTGTTTGGTGCTAGGTTTGTAAGAAGCTTCTGAATGAAAGCTAGAATTAAGGACAAGCCAAAGGAGTAATGTctctatgtatttttatgttttgtgaataTAATATCTAGGGGGAAAAACCTAATTAATCTGATTTATGAGTTTAATAATAAGTCACAAGACGGCCTTAAACTGAACTCGGGATGCATCGATGCACTTTGTTTAAAATCAACTCGCTAACGTTATAAAGAACGAGCCTAGtagtgcatgaacacacacacacacacacacgtgtacacacgTTTCATGACCACTATTTAAACCAGGGAAAGGTAATCAGAGCCAAATCAAATGTTCCATGGCGCTCCTGACTGGTTCATTAATACTaactaggttaaaaaaaaaaaaaaagtttcctcgTTCTGAAAAATTTAGCACCGATGCGTCCCTAAACCGAACCCGAACCCGAACCCATCTCCTCACTAACTCATCGTTTCACAGTGTTATCGTGTCGAGtcttataatatttatgtatgtaaacTGTGTTTGCAATGTATTAAGACATaaactcactggccactttattaggaacacctgcacgtTCATGTACTCGGCCAATCACGACGCAGAAGCGCAAtgcgtaaaatcatgcagatgcacgtcagcctcagattcctgttcttggctgacggAAGTGGAACCCGGTGTGGTCtttctgctcttgtagctcatccaccttaAAGTTTTGTCGTGtcaagatgcttttctgctcaccacgggtgtaaagagtggttattcgagttaccgtagccttcctgtcagctcgaaccagtctgaccgttctcctctgaccgcTCTCATCTCATGGTCTTTGTTTCTCGCACCATTctgcgtaaactctagagacgtctttcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggaaatcccaggagattttcTGAATCTTTattaggtgttcctaataaagtggacaatgaGTGTATATTGCAACTCACTTTTGATTATATGCAACATATTTGTACGTGTTTATTCATTagaaattccaaaaaaaaatgtcaacagcacaaaaaaaattcctaattgtttttaatatctTATTATCACTGAAAGGAAATTGACCTCACTGATGATTTATAAACAGTGTATCGACTTGAAAAGATttggtaaataataataatagaagaataataaaaaaactttattaaaatcagAATGTATTGGCTTGAAACCCACCAGACATGACGGAAGCTCAGCGCTTCGTCTAGCCATCGTATTTTCCTCACGTATCGAATATTTACTCCTCCTTATCgtatttattgttgtttatgtttatttgggAGAACGGAGCGTGGATTACGTCTGAGATGGAGAACAGGGCTTCTTTTGAATTAAACCGTGGGgatttttttatactgtagACGGCATCATGTGATTtgtagaaatgaaataaaacagttaacTTCA
>XR_004579951.1
CAATAGGATTGGAGCTCTGACCCTGGCCCTGGAGACGAGGAACATGGGACTGGGCTGTAACGGCTAATGGTGGTGCAGGCAGGCGCGCGCgctgttagagagagagagagagcagaagaagaagaagcagaagcagcagcagcagcagcagaagaagaagaaagcagcCATGGCGGAATTTCTCAGCGACCCGTCTGTGTTGACTAAAGACAAGCTGAAAAGCGCGCTGGTGGCCAACAACGTGGCGCTACCGAACGGAGAGCAGCGGAAAGGAGTGTATGTGGAGCTGTATCTGAAGAACCTGACCTCCCAGAACAAGAGGAGCGGCTCCGCGGCGGAGGCTTTCTCCAGCGACGAGGAGCCTCCAGCCCCCGCCGCCGCCTCCATTACAGCTCGCTCCGGCAGGAAAGCCACAAGGAAAACAGACCGAGTTCGTCCTGAGGAGATCGACGTGACCGAACTGACCAACGAGGAGCTGAAGGACCAGCTGCTGAAGTACGGAGTCAACGCCGGACCCATCGTAGCATCCACCCGTAAAGTGTACGAGAAGAAGCTGCAGAAGTTACTGGACCAGGGTCCTCCTCAGACCAGCGTCATCGCCGTCTCCGAGCCGGTTCCGACCCACAACAGCCGTAACGGGAATGCAGACTCGGATCAGTACAGCGATAAAGAGGAAGaaacaacagcagcagcaccagTTCCAGAGCCAGAACCCGAGCCGGAACCGGAACCGGAGCCTGTCCCCGTGGTGGAGCGGCCGCTGAGGAGCCGAGGAAAAACACCAGTGACCACCCGAACTCGAAGCAGCCAGAACAAGgaaGAAGACGATGAGTCGGAGGCAGAAGAGCTTCAGGTGGTGAATGTTGAGAGAAAGTCGAGGAGGTCTTCTCGCCGGCTGGATCACGCTGTTCCTGACCCTGTTTCGGCATCTGAGATGCTGCCAGTTCCTCGGGAGAGAAAAAGATTTTCGGCGATACCTAAAGATCCGAAGCCGCTGCTCGCGGACATGCTGCCGATATTTCCCTCAGTGAGCGCGGACGGCTTGTCCGGGTCTCCTGAACGTCTTCCGGCTTCAGTCCACGCCGCTTTGGATGATTACGACGAAGCCTTTTCCACTGACAAGTTTTATAAAAGGGTTCAGCTCCCTGTGAAGACCGTGGAGCCACATGGTACACCATCACCTTCCTGGCagcaagaaagaaacaaagcaagAAAGCTTAGTGAAAGTGCTGCTGCTCTGCCTAAAGCGTCCGGTGAGGAAGTACAGCTTTCCCTCCTCGATACCGCTCTCCTCGAGGTTGGTCCACATGAGGTTCTGGGCTCTAGACCTGGTCATGTGGGCTCGTCCCAGGAGCGTAAATCCGTCTCATCGTTCAAGTGCACAAAACAGCCCAATTCACCTTGTTCAGCTTCAGCTCATCCGTCCAGAGATCTGATCCACATGATGTGCCGCCTTTCACCTTCCCGAGCTAGTCAAGGCAACGATTCCCcccgttctctctctctaacgGATTCTCCCCATCGTCCAACTCGCGATCTTCCCATCGCAAAGAGCTCGCCTGACGTAAAGGAGCGATCAAGGTGGTTCTGCTGCAGCAGTACAGAGCAGAATCGATGGGTTCTTCTCTCCAGTTACCCCTGTGCGGGGGCAGGACGACAGCCCCAGAGATCAGACACCAGGAGGACTGATTGAGAAGTTATCAGCCGTTGAGCAGACCCCAAAAACAGCAGAGAGAGACGTGCTGAAGGAATTGTTCCCTAACGAGGTCCTCAACACTCCCACGGGAATCAGCGCCACTCGTCGGCAGCCGAT

Function

NR:

description
PREDICTED: thymopoietin

GO:

id name namespace
GO:0007084 mitotic nuclear envelope reassembly biological_process
GO:0000793 condensed chromosome cellular_component
GO:0042175 nuclear outer membrane-endoplasmic reticulum membrane network cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
K24031 TMPO; lamina-associated polypeptide 2

RNA

RNA id representative length rna type GC content exon number start site end site
TU328176 False 1893 TUCP 0.42 2 4970314 4972245
XM_026923411.2 True 2949 mRNA 0.49 6 4966232 4984301
XR_004579951.1 False 1813 misc_RNA 0.56 14 4968253 4984315

Neighbor

gene id symbol gene type direction distance location
slc25a3a slc25a3a,slc25a3,LOC108279629,LOC108437945,LOC107732290 coding downstream 1139 4954291 ~ 4965093 (-)
ldhba ldhb,ldhba,LOC107659842,LOC107589975,LOC107725606,LOC107586539,LOC107744904,LOC107694687 coding downstream 27419 4925716 ~ 4938813 (-)
gys2 gys2,LOC107659841,LOC107694689 coding downstream 48452 4897270 ~ 4917780 (-)
psmc2 psmc2,LOC103382982 coding downstream 173435 4784128 ~ 4792797 (-)
cd36 cd36 coding downstream 905718 4044706 ~ 4060514 (-)
strap strap,LOC107744907,LOC107586834,LOC107725662,LOC107694684 coding upstream 4166 4988481 ~ 5003791 (-)
sox5 sox5,LOC107725540,LOC107590035,LOC107587062 coding upstream 96497 5080812 ~ 5315907 (-)
bcat1 bcat1,LOC107725514,LOC107659834,LOC107587341 coding upstream 355458 5339773 ~ 5361979 (-)
casc1 casc1 coding upstream 421159 5405474 ~ 5419057 (-)
parpbp parpbp coding upstream 479998 5464313 ~ 5487007 (-)
LOC113531850 NA non-coding downstream 20954 4943549 ~ 4945278 (-)
G276753 NA non-coding downstream 85224 4880418 ~ 4881008 (-)
G276761 NA non-coding downstream 89440 4817108 ~ 4876792 (-)
G276755 prdm4 non-coding downstream 121861 4801907 ~ 4844371 (-)
G276749 NA non-coding downstream 167075 4798659 ~ 4799157 (-)
G276980 NA non-coding upstream 122565 5106880 ~ 5110968 (-)
G276985 NA non-coding upstream 140158 5124473 ~ 5125478 (-)
LOC117599571 NA non-coding upstream 331592 5315907 ~ 5326714 (-)
G277065 NA non-coding upstream 371585 5355900 ~ 5358204 (-)
G277066 NA non-coding upstream 374136 5358451 ~ 5359228 (-)
G276650 LOC108279602 other downstream 227233 4734931 ~ 4738999 (-)
G276503 LOC108279645 other downstream 379136 4358625 ~ 4587096 (-)
LOC117599578 LOC108279645 other downstream 483667 4466061 ~ 4482565 (-)
LOC117599555 LOC108279645 other downstream 509111 4357539 ~ 4457121 (-)
LOC117599551 LOC108279645 other downstream 604290 4361332 ~ 4361942 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other upstream 996823 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other upstream 997977 5982292 ~ 5984564 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 2437673 7421988 ~ 7500079 (-)
avpr1ab LOC108279517 other upstream 2982504 7966819 ~ 7970571 (-)
G278634 NA other upstream 3068773 8053088 ~ 8068077 (-)

Expression


Co-expression Network