G276980


Basic Information

Item Value
gene id G276980
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 5106880 ~ 5110968 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU328390
GTAAAGTGATATGACTTAATGTCAtctataaataaggaataaaatactgtgtgtcatgttgttataggaaaataacaaacTACACAGTGGTTTGATTAAGAGGAGTTACTGTCggtttataggtacatttaatgttatgtaacATCTAccaagcaagttagttcctgttctcacttacattacgACAGCTATAACCAGGCGTTCCCTTAGCAgctgctcttttttctctctctttaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU328390 True 239 lncRNA 0.34 2 5106880 5110968

Neighbor

gene id symbol gene type direction distance location
strap strap,LOC107744907,LOC107586834,LOC107725662,LOC107694684 coding downstream 103089 4988481 ~ 5003791 (-)
slc25a3a slc25a3a,slc25a3,LOC108279629,LOC108437945,LOC107732290 coding downstream 141787 4954291 ~ 4965093 (-)
ldhba ldhb,ldhba,LOC107659842,LOC107589975,LOC107725606,LOC107586539,LOC107744904,LOC107694687 coding downstream 168067 4925716 ~ 4938813 (-)
gys2 gys2,LOC107659841,LOC107694689 coding downstream 189100 4897270 ~ 4917780 (-)
psmc2 psmc2,LOC103382982 coding downstream 314083 4784128 ~ 4792797 (-)
bcat1 bcat1,LOC107725514,LOC107659834,LOC107587341 coding upstream 228805 5339773 ~ 5361979 (-)
casc1 casc1 coding upstream 294506 5405474 ~ 5419057 (-)
parpbp parpbp coding upstream 353345 5464313 ~ 5487007 (-)
th2 LOC108279869,LOC108437952,LOC107695848 coding upstream 403114 5514082 ~ 5528820 (-)
pah pah coding upstream 418188 5529156 ~ 5550953 (-)
LOC113531850 NA non-coding downstream 161602 4943549 ~ 4945278 (-)
G276753 NA non-coding downstream 225872 4880418 ~ 4881008 (-)
G276761 NA non-coding downstream 230088 4817108 ~ 4876792 (-)
G276755 prdm4 non-coding downstream 262509 4801907 ~ 4844371 (-)
G276749 NA non-coding downstream 307723 4798659 ~ 4799157 (-)
G276985 NA non-coding upstream 13505 5124473 ~ 5125478 (-)
LOC117599571 NA non-coding upstream 204939 5315907 ~ 5326714 (-)
G277065 NA non-coding upstream 244932 5355900 ~ 5358204 (-)
G277066 NA non-coding upstream 247483 5358451 ~ 5359228 (-)
G277443 NA non-coding upstream 336183 5447151 ~ 5448687 (-)
tmpoa LOC108279628 other downstream 122565 4966232 ~ 4984315 (-)
G276650 LOC108279602 other downstream 367881 4734931 ~ 4738999 (-)
G276503 LOC108279645 other downstream 519784 4358625 ~ 4587096 (-)
LOC117599578 LOC108279645 other downstream 624315 4466061 ~ 4482565 (-)
LOC117599555 LOC108279645 other downstream 649759 4357539 ~ 4457121 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other upstream 870170 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other upstream 871324 5982292 ~ 5984564 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 2311020 7421988 ~ 7500079 (-)
avpr1ab LOC108279517 other upstream 2855851 7966819 ~ 7970571 (-)
G278634 NA other upstream 2942120 8053088 ~ 8068077 (-)

Expression


Co-expression Network