G277065


Basic Information

Item Value
gene id G277065
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 5355900 ~ 5358204 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU328476
CCATGGCTTTACTGTAGTCATTCATGCTAACTATAATACTACCATGGCTTTACTATAGTCATTCATGCTAACTATAATACTACCATGGCTTTACTATAGTCATTCATGCTAACTATAATACTACCATGGCTTTACTATAGTCATTCATGCTAACTATAATACTACCATGGCTTTAGTATAGTCATTCATGCTAACTATAATACTGCCATGGCTTTACTATAGTCATTCATGCTAACTATAATACTGCCATGGCTTTACTATAGTCATTCATGCTAACCTTTAGTACTACCATGGTTATATTATGGTACTTCATAGTCACAATAATACTACCATGGTTTTACTATAGTATGGCATACTTACTATAAAACTGCCACTGCTTTATTATAACACTCCGTGGTAACTGTAATGCTACTATGTTTCTGCTCTACTCTGATGCTTCATGCTCACTATAGTACTGTTATGGTTTTAATATGGTACGTAGCATTAACTATATGGTATTTCACGTTAATAAGGTAAACATGGTTTTGCTGTAGTACTCCAGGTTTACTATAATACATCCATGGCTTTACTGTTATACATAATACGCACTATAATACTGCCACAGTTTTACTATACTACTTCATGTGCACTATAATATACAGCCATGGCTTTACTCTAACACAATGTGGGAACTGTAATACAACTATGAGTCTCCTATGATACTTCATGGTCACTATAATACTGCTACAGCTTTACTATGATACTTCACACTCGCTATAATACTGCTACAGCTTTACTATAATGCTTTGTAGTACCTATAGCATTACCCTGGTTGGTTTTACTATAGTATGTGATGATCATTATAATACTAAACATGGGTTTACTATTGTACTTTATGCTAACTGTAATACTACGAAGGCTTTACTGTGTTGCTTAACATTTACTATAAGGGTACAATGGctttattttgacatttcatGCTAAAAGTAATACTAACATGATTTTACTTTAGTACTTCATGGTACCTGTACTACTACCAGAGTTTTGCTGTGGTACTTGTAATATGTCAGTATAATACTACTGTTGTTTcatatgttatgttttattagtTCTAGTATCCTGGTTTAACTATAATACATCATGGTAACTGTAATACTACTATGGTGGTACGTCAGACTAATACTGCTATCATTTATATGATATATGCATATGATATATGCTATATCATTTACTATGATCCCTATATACTTCATAGTATCTAAGATACTACCATGGTTTTACTACAGTACCTCATGCTATCTCTAATATCATGGTTTTATTGTCGTTCTTCATGCTAGCTATTCTTCATGGGAACTAGATTTACAATGGTAGTACTGTAATACTACTTTGTTTTACTGTATTACTTTATAGTAACTCTAATACTACCATAGTTAAACTATAACACTTCATGGTTATTGTAATACTACCATAGTTTTACAATCATACATCACAGTACCTATAATACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU328476 True 1484 lncRNA 0.32 2 5355900 5358204

Neighbor

gene id symbol gene type direction distance location
sox5 sox5,LOC107725540,LOC107590035,LOC107587062 coding downstream 39993 5080812 ~ 5315907 (-)
strap strap,LOC107744907,LOC107586834,LOC107725662,LOC107694684 coding downstream 352109 4988481 ~ 5003791 (-)
slc25a3a slc25a3a,slc25a3,LOC108279629,LOC108437945,LOC107732290 coding downstream 390807 4954291 ~ 4965093 (-)
ldhba ldhb,ldhba,LOC107659842,LOC107589975,LOC107725606,LOC107586539,LOC107744904,LOC107694687 coding downstream 417087 4925716 ~ 4938813 (-)
gys2 gys2,LOC107659841,LOC107694689 coding downstream 438120 4897270 ~ 4917780 (-)
casc1 casc1 coding upstream 47270 5405474 ~ 5419057 (-)
parpbp parpbp coding upstream 106109 5464313 ~ 5487007 (-)
th2 LOC108279869,LOC108437952,LOC107695848 coding upstream 155878 5514082 ~ 5528820 (-)
pah pah coding upstream 170952 5529156 ~ 5550953 (-)
LOC113532275 LOC108279443 coding upstream 207473 5565677 ~ 5625699 (-)
LOC117599571 NA non-coding downstream 29186 5315907 ~ 5326714 (-)
G276985 NA non-coding downstream 230422 5124473 ~ 5125478 (-)
G276980 NA non-coding downstream 244932 5106880 ~ 5110968 (-)
LOC113531850 NA non-coding downstream 410622 4943549 ~ 4945278 (-)
G276753 NA non-coding downstream 474892 4880418 ~ 4881008 (-)
G277066 NA non-coding upstream 247 5358451 ~ 5359228 (-)
G277443 NA non-coding upstream 88947 5447151 ~ 5448687 (-)
G277447 NA non-coding upstream 201730 5559934 ~ 5560322 (-)
G277494 dcn non-coding upstream 300280 5658484 ~ 5727420 (-)
G277506 NA non-coding upstream 303607 5661811 ~ 5663019 (-)
tmpoa LOC108279628 other downstream 371585 4966232 ~ 4984315 (-)
G276650 LOC108279602 other downstream 616901 4734931 ~ 4738999 (-)
G276503 LOC108279645 other downstream 768804 4358625 ~ 4587096 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other upstream 622934 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other upstream 624088 5982292 ~ 5984564 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 2063784 7421988 ~ 7500079 (-)
avpr1ab LOC108279517 other upstream 2608615 7966819 ~ 7970571 (-)
G278634 NA other upstream 2694884 8053088 ~ 8068077 (-)

Expression


Co-expression Network