G277066


Basic Information

Item Value
gene id G277066
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 5358451 ~ 5359228 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU328477
AGCTGGCTGTTTGTGGTGAACAATGAAAGAACTTCACAGTGCATTAGCGATCTCTGATAACCTGAGACGCATTCCTGTAAACAAACCTCATATGTATAAGGAGACTGTGCAAGACCATTCATAACCAAACACAAGGTTTTAGCTTTGGGTCTGGGGAAAGAGTTTTGTTCCCAGAATTAATGTTATTAGGAAATGATCTACGTTACTATTAGCCAAGATAAATACAAAGCAAATTTTAGGTGTTACAAATCGTGTTATCAGTCAGTCCCCAAATAAAGTTCACTCAATTTAGTGAACTCTCACTATAGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU328477 True 310 lncRNA 0.37 2 5358451 5359228

Neighbor

gene id symbol gene type direction distance location
sox5 sox5,LOC107725540,LOC107590035,LOC107587062 coding downstream 42544 5080812 ~ 5315907 (-)
strap strap,LOC107744907,LOC107586834,LOC107725662,LOC107694684 coding downstream 354660 4988481 ~ 5003791 (-)
slc25a3a slc25a3a,slc25a3,LOC108279629,LOC108437945,LOC107732290 coding downstream 393358 4954291 ~ 4965093 (-)
ldhba ldhb,ldhba,LOC107659842,LOC107589975,LOC107725606,LOC107586539,LOC107744904,LOC107694687 coding downstream 419638 4925716 ~ 4938813 (-)
gys2 gys2,LOC107659841,LOC107694689 coding downstream 440671 4897270 ~ 4917780 (-)
casc1 casc1 coding upstream 46246 5405474 ~ 5419057 (-)
parpbp parpbp coding upstream 105085 5464313 ~ 5487007 (-)
th2 LOC108279869,LOC108437952,LOC107695848 coding upstream 154854 5514082 ~ 5528820 (-)
pah pah coding upstream 169928 5529156 ~ 5550953 (-)
LOC113532275 LOC108279443 coding upstream 206449 5565677 ~ 5625699 (-)
G277065 NA non-coding downstream 247 5355900 ~ 5358204 (-)
LOC117599571 NA non-coding downstream 31737 5315907 ~ 5326714 (-)
G276985 NA non-coding downstream 232973 5124473 ~ 5125478 (-)
G276980 NA non-coding downstream 247483 5106880 ~ 5110968 (-)
LOC113531850 NA non-coding downstream 413173 4943549 ~ 4945278 (-)
G277443 NA non-coding upstream 87923 5447151 ~ 5448687 (-)
G277447 NA non-coding upstream 200706 5559934 ~ 5560322 (-)
G277494 dcn non-coding upstream 299256 5658484 ~ 5727420 (-)
G277506 NA non-coding upstream 302583 5661811 ~ 5663019 (-)
G277508 NA non-coding upstream 310340 5669568 ~ 5670534 (-)
tmpoa LOC108279628 other downstream 374136 4966232 ~ 4984315 (-)
G276650 LOC108279602 other downstream 619452 4734931 ~ 4738999 (-)
G276503 LOC108279645 other downstream 771355 4358625 ~ 4587096 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other upstream 621910 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other upstream 623064 5982292 ~ 5984564 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 2062760 7421988 ~ 7500079 (-)
avpr1ab LOC108279517 other upstream 2607591 7966819 ~ 7970571 (-)
G278634 NA other upstream 2693860 8053088 ~ 8068077 (-)

Expression


Co-expression Network