G277447


Basic Information

Item Value
gene id G277447
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 5559934 ~ 5560322 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU328897
gcattttccccattttttgttttctccttgGAATATTGTAAAGGCAGAGTTAAACAGGCAGTGTGGAGAGAAAATAGACCGCCATGGTTTGGACAATAGCTGCATAACCTTTGATCACTGTGAACTCCGAGTCATATTACATGTACTTCCCGTTAAATAAGACACGTTGGTGCTGAAATCAAACTCTGGAGTGTCAAACTCCAGGAAAAAtcagacaaacaaaacaaaacaaaaaaagcctaATACCGTAAACAGATGCATTTAGACTACACGTCTGAAAAGGCAAGAGGTAATAAGCAACATACGGTGTTTAGGCTGTGTTTATGTATAAgcca
>TU328898
TATTTTTAGAAACTTTTTATTATGAGActaaagtgtaaaaaatatgGATGTAAggcattttccccattttttgttttctccttgGAATATTGTAAAGGCAGAGTTAAACAGGCAGTGTGGAGAGAAAATAGACCGCCATGGTTTGGACAATAGCTGCATAACCTTTGATCACTGTGAACTCCGAGTCATATTACATGTACTTCCCGTTAAATAAGACACGTTGGTGCTGAAATCAAACTCTGGAGTGTCAAACTCCAGGAAAAAtcagacaaacaaaacaaaacaaaaaaagcctaATACCGTAAACAGATGCATTTAGACTACACGTCTGAAAAGGCAAGAGGTAATAAGCAACATACGGTGTTTAGGCTGTGTTTATGTATAAgcca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU328897 False 335 lncRNA 0.39 1 5559934 5560268
TU328898 True 389 lncRNA 0.36 1 5559934 5560322

Neighbor

gene id symbol gene type direction distance location
pah pah coding downstream 8981 5529156 ~ 5550953 (-)
th2 LOC108279869,LOC108437952,LOC107695848 coding downstream 31114 5514082 ~ 5528820 (-)
parpbp parpbp coding downstream 72927 5464313 ~ 5487007 (-)
casc1 casc1 coding downstream 140877 5405474 ~ 5419057 (-)
bcat1 bcat1,LOC107725514,LOC107659834,LOC107587341 coding downstream 197955 5339773 ~ 5361979 (-)
LOC113532275 LOC108279443 coding upstream 5355 5565677 ~ 5625699 (-)
si:dkeyp-38g8.5 LOC108280028 coding upstream 224588 5784910 ~ 5790989 (-)
ucn3l ucn3 coding upstream 449968 6010290 ~ 6011543 (-)
col7a1l LOC108279990,LOC108435442,LOC107676908 coding upstream 452702 6013024 ~ 6112709 (-)
LOC113532437 NA coding upstream 472707 6033029 ~ 6033193 (-)
G277443 NA non-coding downstream 111247 5447151 ~ 5448687 (-)
G277066 NA non-coding downstream 200706 5358451 ~ 5359228 (-)
G277065 NA non-coding downstream 201730 5355900 ~ 5358204 (-)
LOC117599571 NA non-coding downstream 233220 5315907 ~ 5326714 (-)
G276985 NA non-coding downstream 434456 5124473 ~ 5125478 (-)
G277494 dcn non-coding upstream 98162 5658484 ~ 5727420 (-)
G277506 NA non-coding upstream 101489 5661811 ~ 5663019 (-)
G277508 NA non-coding upstream 109246 5669568 ~ 5670534 (-)
G277519 NA non-coding upstream 170523 5730845 ~ 5731069 (-)
G277502 NA non-coding upstream 201338 5761660 ~ 5766267 (-)
tmpoa LOC108279628 other downstream 575619 4966232 ~ 4984315 (-)
G276650 LOC108279602 other downstream 820935 4734931 ~ 4738999 (-)
G276503 LOC108279645 other downstream 972838 4358625 ~ 4587096 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other upstream 420816 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other upstream 421970 5982292 ~ 5984564 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 1861666 7421988 ~ 7500079 (-)
avpr1ab LOC108279517 other upstream 2406497 7966819 ~ 7970571 (-)
G278634 NA other upstream 2492766 8053088 ~ 8068077 (-)

Expression


Co-expression Network