G277494 (dcn)


Basic Information

Item Value
gene id G277494
gene name dcn
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 5658484 ~ 5727420 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU328952
CTCAGGAAAGAAGTCACCTTTATTGCTGATATATTAAAGTCCGGACGACTACCGTGCTTGTTTTCTTTAAGCATggaaagggattttttttatacagcatttatttacagCTTCTATACATGTGACAGTCACTAACACAGGACAGAGGGGGACATGTTCAGCCACGTCTATCTGCTCCTTTCACTCCTCttcagacaaaaatgcacacatttaaacatgGCACGCCACCCTTGGTGAAGAAGAACAAGTAGAAGAATAGTGAAAAAGCACAGATCTTTGGAAATTGCTTCCATTAAAAAGACAATATAGTTTATTCTACCTCTTgaagagcttttttttctaCCATATGTGGCATGGCAGCTGGGTTTAAAACGATCAGACAAACGAACgaacaaacaaaatgcacatCTGAAGCAAGAGGAGGAAAATACTGCAGTGTGACAATTCTCCTAATTGAAATGAatactacagaaaaaaagagaaaaatggaaaatttgAGCATGATGGCTGTATTTCTAACAGTACACGCTGAACACTACTGCTATACAGGTAATAATAGTTGAGTGCACCTAGTATATCAGCTCTTTTACCTGGTACTGTGGAGCAAATTAACCTTTCGCTGCCCGCTCAGCAGGCCCGCCTTGTCAATTTAGAAAAGTCCCAAAGATCCAGAGAGGGGCCAGGAGTGGATCTTCtttatatgaacaaaaaaaaaatctgaatagaACCACATTCTTTTGAACCAAAGGACTACATATATGTGCACTTGATTATCCTAAGTGGTCATGGCTTTTTCTTTAATACCTCtgtgattaattaattatgctcTCCAACTTAACACAAGGTTCTAGTAGTGCTATAGGGATgtatatgagaaaaaaaaaatgaggaacaAAAGCCTGATACGTGTTTAGCTATTTCTTTTTGTAACATGTAATGTGCAAGATACTTGatgttactgtttattactCGATTATGTGAGATTAGTGCCCAGTATTGACTGTTGTGTGCCATTTTCAGTATACTCAGAACACATTTTGAATCTGAGTTATGACATTCGAATTCGAGTTACACACTTGAGGTGCTTTGGAAAGGGGGAGGGGGCGGGACAAGGACAGTGATCAGGCACTCTGACTGGACGCCCTATTTCTTCCTGTAGTTGCCCAGCTGAACAGCGGAGCGGTCAAAGACACAACGGAAGGTGATGGGTTGGACCTCCCAGTACGGCACGGGGTTGCTGAACAGACTGATGCCGGAATACATGGCCTTCTTGGTGTTGAAGCTGGGAGGGCAGAAGTCTTCTGTTCCCACAGAGGCTATCTTGTTGGCATGAAGATAGatcaccCTGAATGTACTTGTGGTCAGAAAGACCAGCAGGCACACTGGTTAGAGCGTTGTGGTCCAGGTGGAGCTCCCTCAAGTGTGGCATCATGGACAGAGTTCTGTTCTCCACAACACTGATCTCATTACTGCTCAGGCcaagcctTGGCCAGGTGCTTGAGACCTTTCAGGCTGTCGGCAGAGACCTTGGTAATCCTGTTCCCATCCAGGTGGAGCTCTGACAGAGAGCTAGCTGAcctttgggaacagtggtgatgttGGTGTCAGCGATACGGATGTAGGAAACCCTCTTCAGATCCTTGAAAGCATCTGCGTCCACACCTGAACTGGTCAAGGGGTTGGAGCCAAGTCCATCACAATGACATTAACCATGCCAGTGAAGGAGGCCTTCTTGATTTTGGTGATCTGGTTCTCATGGATGCGCAGCTCCTGGACGCTCTTGGGCATGTTGCTGGGAATATCCTTCAGCATGTTCTTGGACAGGTAAAGCCTCTGAAGGTTGACCAGAGGAGCAAAAGCTTTGGCATGGATGATGGCGATCTTGTTGTTTACCAGGATGAGAGCCTGTAAGAGCCGAGAAGCAGAGGATTAGGGTATATGTTGTACATGTTGGTTTTCAATGGCATTAATATGAATCAAAGTGAATTGAGAAGAACATCttaatgaaaatacagctgTATAATTGGTTGACTAAGAAAAGATCAGCATGGTAAATGTGTTCAGCACATTTTCTACCACATGAAGTGGTCCTCAAGTTGAGTGTTAGTGCATTCCTACCAAGAAGAGTCATCAGTTCCAACATTCTACCacttaaaaataagcaattaaaCAGTCACTGAAAATTCAGCATCAATTGTTTTCTTAGGAACACATTTAAATCCCAATGGACCCAGACACCGTGCGGTTGTTATAATGATTCTACCAAATATAGTGTGAAAGATCTCTCCCTCCACCTACTTCTGACATTCATCCAGATAGATAGAAATGCTGGGAATGTGTTACTTCTCAAAGGGCAAGTAACGTAGCATAAAAACAGCTCCGAGTCCGTGACAGCAGTCTGTATTTATTGTGCTTAAAGCACTATAAATGTGCACACGGAGGGCTGATTTCCAAAAGTGAATGGTTTCTCGCCCTGCACCTGGACCCTCAGCATTATGCTAGGGCTGACAACCATGTGCATGGGAGAGATGTGAAAGATGGGCTTTAAACCTTCTTTTATGTGTGCATATTTGGAATTTAGGGTTGAGCTATGGCTGGGTTTTTGTTCTGGAAACCAGGTCTGATACTTAACTCCTTTAAttgttctgaaatgttttttttttttttttttttttgaagaacaaaaatagtttttccAACAAAATGACCAGGAATGTTTTAGCTCGCTTTTttgacagtgacatttttcattccgcttattttaaaaatagagaaGAAGCACGTTAAAAGTCCTCAGAGCGTTCACTGTGGTCTGGAACAGTGGAACAGTGGAACAGCTGAAGAATGGGAAACAAAGTTCTCCTCATGGAATTTACTCTGGAGCTGAGAGGATTTGGgaagtttgaaaaaaaatacaattttgaaAGCAAAGGCTGTGATACAGAtaggtagagagagaaagatagagagggTTTACATGAAGTCCTTTGAGGCCTTTGAAGTCGTTCTCTCTGATCTCGGTGATCTTGTTGTTTTGCAGGTCCAGCAGATGGGCGTCTGATGGGATATCCTCTACCTAGATCAGAGCACTGCACCACACGCAGATGGCACTGGCATCTGAATGGACAAACGGGTCCAGCAGGTACATCAGGTACTTCTGGAGGTGTGACGTGAGTTGGCCCTTCACCTGAAATTTCCTCTATCCCGAAGTCCAGAAAGCCACTCTGACGGAAGGGCAGAGCCCAGCACACGGACACCAGAAGCAGGGTAAGACAGGCCAACCTCATAGTGTCACTGACCTGGAGGGTGGAGGAGACAGGGCAAAGGTCAGAG
>TU328954
CTCAGGAAAGAAGTCACCTTTATTGCTGATATATTAAAGTCCGGACGACTACCGTGCTTGTTTTCTTTAAGCATggaaagggattttttttatacagcatttatttacagCTTCTATACATGTGACAGTCACTAACACAGGACAGAGGGGGACATGTTCAGCCACGTCTATCTGCTCCTTTCACTCCTCttcagacaaaaatgcacacatttaaacatgGCACGCCACCCTTGGTGAAGAAGAACAAGTAGAAGAATAGTGAAAAAGCACAGATCTTTGGAAATTGCTTCCATTAAAAAGACAATATAGTTTATTCTACCTCTTgaagagcttttttttctaCCATATGTGGCATGGCAGCTGGGTTTAAAACGATCAGACAAACGAACgaacaaacaaaatgcacatCTGAAGCAAGAGGAGGAAAATACTGCAGTGTGACAATTCTCCTAATTGAAATGAatactacagaaaaaaagagaaaaatggaaaatttgAGCATGATGGCTGTATTTCTAACAGTACACGCTGAACACTACTGCTATACAGGTAATAATAGTTGAGTGCACCTAGTATATCAGCTCTTTTACCTGGTACTGTGGAGCAAATTAACCTTTCGCTGCCCGCTCAGCAGGCCCGCCTTGTCAATTTAGAAAAGTCCCAAAGATCCAGAGAGGGGCCAGGAGTGGATCTTCtttatatgaacaaaaaaaaaatctgaatagaACCACATTCTTTTGAACCAAAGGACTACATATATGTGCACTTGATTATCCTAAGTGGTCATGGCTTTTTCTTTAATACCTCtgtgattaattaattatgctcTCCAACTTAACACAAGGTTCTAGTAGTGCTATAGGGATgtatatgagaaaaaaaaaatgaggaacaAAAGCCTGATACGTGTTTAGCTATTTCTTTTTGTAACATGTAATGTGCAAGATACTTGatgttactgtttattactCGATTATGTGAGATTAGTGCCCAGTATTGACTGTTGTGTGCCATTTTCAGTATACTCAGAACACATTTTGAATCTGAGTTATGACATTCGAATTCGAGTTACACACTTGAGGTGCTTTGGAAAGGGGGAGGGGGCGGGACAAGGACAGTGATCAGGCACTCTGACTGGACGCCCTATTTCTTCCTGTAGTTGCCCAGCTGAACAGCGGAGCGGTCAAAGACACAACGGAAGGTGATGGGTTGGACCTCCCAGTACGGCACGGGGTTGCTGAACAGACTGATGCCGGAATACATGGCCTTCTTGGTGTTGAAGCTGGGAGGGCAGAAGTCTTCTGTTCCCACAGAGGCTATCTTGTTGGCATGAAGATAGatcaccCTGAATGTACTTGTGGTCAGAAAGACCAGCAGGCACACTGGTTAGAGCGTTGTGGTCCAGGTGGAGCTCCCTCAAGTGTGGCATCATGGACAGAGTTCTGTTCTCCACAACACTGATCTCATTACTGCTCAGGCcaagcctTGGCCAGGTGCTTGAGACCTTTCAGGCTGTCGGCAGAGACCTTGGTAATCCTGTTCCCATCCAGGTGGAGCTCTGACAGAGAGCTAGGCAGACCTGCAAGGATTCGTAAGCAGGATAAAGAAATGAACAGTGATGGTAAGTACAGTTTAGTCATCTTTTCAAATTACAGGACAAGGAATAATATGAATAGGAATTGTAGGAATGGGTATGGAGTCAAGTATGAACAATGATCTCCTGAGTGACCCTTTCGTCTGGAATGTCCTGTTTAGCTGAAATGTTCTACCTAAAATATCTACATGGAATTACTGTTGCTGTCATTAATTTTATACGATTACGCATTAGGGATTGTAGGTTTTGTTTATCAGTGTGAAGTCAAactataaatagacaaataaaagtttaaaaattgtgtgtgtgtgatgcataAATTGTCCTACtcagaccaaaaaaacaaaaaaaatcagaccaTTTGTCTCACCACTGCCATGGCGACAGACATCACACGACTGGTTGCATTCATCATCATCCCAAACTTCATCAAAATGAACCGCCATCATGGCACGCCGACACCTGAGCGCAAACATCGCACGTGAATGAGTCATTGCAACAACCGAATTTCCGTCATACCGTCATTTCCATTTCACACTGGACTTTAATACAACTGCAGTAACAAAAGCACGTGCTCATGTGTAAGCTGGTCCATATGAGCTAACGGCAGTGGCGTTTTCTCACCTGTCCACGTTCTGACAATAAGCCACCATATTGTGAAGCTTCTGCTGGCCGGTGTTCTCCATCACAACCATGGTGCTGATCCTGAAAATATCCGCAAACCCATAGAACACAACGCAGTCTGCTGGACCGTCATCTCTccctgaaaacaaaataaagctcAGTTTgagtcacatcacatcacacactgttctcaCATTTCAACGCAAATGAGGTAGCGATATCTGCCATGTCTTATTAAGGGCTGATTCCACTATTACTGGTTTTAG

Function

symbol description
dcn Predicted to enable collagen binding activity. Predicted to be an extracellular matrix structural constituent conferring compression resistance. Acts upstream of or within cartilage development; chondroitin sulfate proteoglycan metabolic process; and convergent extension involved in axis elongation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including cranial cartilage; epidermis; nervous system; pericardial region; and periderm. Human ortholog(s) of this gene implicated in breast carcinoma; congenital stromal corneal dystrophy; and high grade glioma. Orthologous to human DCN (decorin).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU328952 True 3333 lncRNA 0.43 7 5714510 5727420
TU328954 False 2484 lncRNA 0.42 4 5658484 5727420

Neighbor

gene id symbol gene type direction distance location
LOC113532275 LOC108279443 coding downstream 32785 5565677 ~ 5625699 (-)
pah pah coding downstream 107531 5529156 ~ 5550953 (-)
th2 LOC108279869,LOC108437952,LOC107695848 coding downstream 129664 5514082 ~ 5528820 (-)
parpbp parpbp coding downstream 171477 5464313 ~ 5487007 (-)
casc1 casc1 coding downstream 239427 5405474 ~ 5419057 (-)
si:dkeyp-38g8.5 LOC108280028 coding upstream 57490 5784910 ~ 5790989 (-)
ucn3l ucn3 coding upstream 282870 6010290 ~ 6011543 (-)
col7a1l LOC108279990,LOC108435442,LOC107676908 coding upstream 285604 6013024 ~ 6112709 (-)
LOC113532437 NA coding upstream 305609 6033029 ~ 6033193 (-)
trnam-cau_46 NA coding upstream 375656 6103076 ~ 6103147 (-)
G277447 NA non-coding downstream 98162 5559934 ~ 5560322 (-)
G277443 NA non-coding downstream 209797 5447151 ~ 5448687 (-)
G277066 NA non-coding downstream 299256 5358451 ~ 5359228 (-)
G277065 NA non-coding downstream 300280 5355900 ~ 5358204 (-)
LOC117599571 NA non-coding downstream 331770 5315907 ~ 5326714 (-)
G277519 NA non-coding upstream 3425 5730845 ~ 5731069 (-)
G277502 NA non-coding upstream 34240 5761660 ~ 5766267 (-)
G277500 NA non-coding upstream 50582 5778002 ~ 5781171 (-)
G277567 NA non-coding upstream 233254 5960674 ~ 5997392 (-)
G277577 NA non-coding upstream 251530 5978950 ~ 5988344 (-)
tmpoa LOC108279628 other downstream 674169 4966232 ~ 4984315 (-)
G276650 LOC108279602 other downstream 919485 4734931 ~ 4738999 (-)
G276503 LOC108279645 other downstream 1071388 4358625 ~ 4587096 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other upstream 253718 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other upstream 254872 5982292 ~ 5984564 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 1694568 7421988 ~ 7500079 (-)
avpr1ab LOC108279517 other upstream 2239399 7966819 ~ 7970571 (-)
G278634 NA other upstream 2325668 8053088 ~ 8068077 (-)

Expression


Co-expression Network